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Detailed information on CNT30102325


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005507, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554221Oryza rufipogonOryza glaberrima94.589.5799.7670forward
CNT30576806Oryza rufipogonOryza barthii94.0810099.55667forward

Expression of CNT30102325

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLESWACVPSKRQMRHSWWIPAKNLYLNLQVVGEVVLAL*

>peptide 2 (48 aa)
QNITHLLPLLFFFSFSSSPSRSTQRRCFPGSAVALPCACCHAPLRRPF*

>peptide 3 (58 aa)
TKHNPPSSSSFFFLVLFLSLTLHPAPLLPRQCRRSPLRLLPRPTPATLLAAAPQPSPA*

Sequence

>CNT30102325
ACAAAACATAACCCACCTTCTTCCTCTTCTTTTTTTTTTCTCGTTCTCTTCCTCTCCCTCACGCTCCACCCAGCGCCGCTGCTTCCCAGGCAGTGCCGTC
GCTCTCCCCTGCGCCTGCTGCCACGCCCCACTCCGGCGACCCTTCTAGCCGCCGCCCCGCAACCGTCGCCGGCCTGAATCGGTTTCTTGGCTCCTCGCTT
CTCTGCCCCTAAGCTAATCCCAGCCACCGGTCTCTTGCTGCTGCAGCCGCCGTGGAGATGGCCGGTGGAAACACAGCGCACGCAACTCCGGTGGCTGCAT
CCCTTTCCCCCATAGGAAGAATGCATGCTTGAATCCTGGGCGTGCGTCCCGTCGAAGCGACAGATGAGGCACTCTTGGTGGATACCTGCGAAGAACCTTT
ACCTGAATTTGCAAGTCGTGGGGGAGGTGGTTTTGGCGCTGTAAAAACTCCGGACGCAACTGGTCGCTTGCTCGTTGGTGGAGGCGCCCAGAAAGAGATA
GGCTCGGGTAGCCTCTAAGATGGCTTCGCCCGCGGCGTGTGTGTGCTCGCCTTGTTCTTAACCTGTTGATCACCCCCTGCAATTACTTCTCTGCAAGCAT
AGCAAACTGAAACAACTGGTTGACAGTTTTAAATTCCTTATTATCAACTATGTCTTGAATTTCGCACCTCAATTCCGAGTAAAAATGACAAATAGAATCT
TCGGTTCCC