Detailed information on CNT30102303


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002903, E-value = 2e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553677Oryza rufipogonOryza glaberrima50.620.3588.24255reverse complement
CNT30105187Oryza rufipogonOryza longistaminata50.231.9896.05253reverse complement
CNT30576560Oryza rufipogonOryza barthii20.045.1796.04101reverse complement
CNT30604419Oryza rufipogonOryza punctata54.56100.7385.09275forward

Expression of CNT30102303

Peptides detected in this lncRNA

>peptide 1 (65 aa)
VRWISLPLSPTAQGGLDPRPDRGRPAQWLVGPRHTVPYKEGWRTGRITKQGTRFVAAAATPPHKP*

>peptide 2 (48 aa)
MAGTSSSSNASTGHIPKPFPLFSIVVQSSIANRTTRLDLNLGDPIDNSN

Sequence

>CNT30102303
CTGTTAGATGGATCTCCCTCCCCTTGAGCCCAACGGCTCAAGGGGGCCTTGACCCGCGCCCTGATCGGGGGCGCCCAGCCCAATGGCTGGTGGGCCCCCG
TCACACTGTGCCATATAAAGAGGGGTGGAGGACGGGACGGATAACAAAACAAGGAACGAGGTTCGTCGCCGCCGCCGCCACTCCACCCCATAAACCCTAA
CCGATCGAGGGGGCGCAGCCAGTGACGGGAAGACTCCACCGCCGCGCCACGACCTCGCCGGGATCCCCTACGACCACCACTGCCGCGCAGCACCGTCGCC
GTCACGACCGCCATCGCCGCCGCCGCCCACGTCAAGCAGAGCGACGACAACGACGATGGCTGGGACTTCCTCTTCATCCAACGCGTCAACCGGTCACATC
CCTAAACCCTTTCCCTTATTCTCTATTGTTGTTCAATCATCCATTGCAAATAGAACCACCCGACTAGATCTAAACCTAGGTGATCCAATAGACAACTCTA
ACAA