Detailed information on CNT30102296


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596307Oryza rufipogonOryza meridionalis90.7558.4399.13461forward
CNT30370387Oryza rufipogonOryza glumipatula86.0281.6898.86437forward
CNT30576628Oryza rufipogonOryza barthii76.3899.2398.71388forward
CNT30117582Oryza rufipogonOryza nivara99.4168.4397.43505forward

Expression of CNT30102296

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPLGVLKIKGMLFMTMTCIMEDGMSRCMQGSGLVALLVNLEYWST*

>peptide 2 (69 aa)
AGRELGAESGQWGVPASFDLNYEDSDANISGQASELSGGLEDQYYAPWCAENQGDVVYDYDMYYGGWDE*

>peptide 3 (29 aa)
MYAGEWSSSFVSEPGILEHLVTKVLLAPA*

Sequence

>CNT30102296
GCTGGAAGGGAACTAGGGGCGGAGTCGGGTCAGTGGGGAGTGCCAGCTAGTTTCGATTTGAACTACGAGGATTCAGATGCAAACATTTCTGGGCAAGCCA
GTGAGTTAAGTGGTGGGTTGGAGGATCAGTACTATGCCCCTTGGTGTGCTGAAAATCAAGGGGATGTTGTTTATGACTATGACATGTATTATGGAGGATG
GGATGAGTAGATGTATGCAGGGGAGTGGTCTAGTAGCTTTGTTAGTGAACCTGGAATATTGGAGCACCTAGTGACCAAAGTATTGCTAGCTCCTGCTTGA
AACTTGTATTATTAATGGGTGAACGTGTAAGGCCCTGTTTCAGACTTTAGCCCTGCGTGGCATGGTATTGTAATGTTATCTGAACCTTCTAGCTATTATT
CTGCTGCTATCTCTGATGTGGATCATTATTCGCTAGAGTGCGGCTATGGCAAATAATAATCCATGGACTAGTGACGTCATTTCGGTAATGACGGCGTGGG
TCGTCACA