Detailed information on CNT30102287


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694403Oryza rufipogonOryza sativa79.4154.11100270forward
CNT30673990Oryza rufipogonSetaria viridis36.1832.0391.06123forward
CNT30183892Oryza rufipogonSecale cereale31.1820.0489.62106forward
CNT30306537Oryza rufipogonTriticum aestivum31.1830.0390.57106forward
CNT30226503Oryza rufipogonHordeum vulgare28.5317.2991.7597forward
CNT30400060Oryza rufipogonTriticum turgidum31.1820.1190.57106forward
CNT30670281Oryza rufipogonTriticum dicoccoides24.1210.1292.6882forward
CNT30580567Oryza rufipogonEchinochloa crusgalli36.4716.692.74124forward

Expression of CNT30102287

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVLGMMMSPMLLCHGSERWLARFSSGPVPGYVAWPPGSA

>peptide 2 (40 aa)
FDTKIKMDGFTREHPLLKLYITRPTSSCLPADHCVRTRAQ*

>peptide 3 (55 aa)
LIQKLRWTDSQESTLYLSFTLQGQPAAACRPTTACARARNNQPITHSTHAHKNHP*

Sequence

>CNT30102287
TTTGATACAAAAATTAAGATGGACGGATTCACAAGAGAGCACCCTCTACTTAAGCTTTACATTACAAGGCCAACCAGCAGCTGCCTGCCGGCCGACCACT
GCGTGCGCACGCGCGCGCAATAATCAACCAATCACACACAGTACGCACGCACATAAAAACCACCCATAGCCTTCACGTACGCCCGGACGCACGCACCGGT
TCGTGCCAAGCTCAAGGGTAGATGGTTCTCGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCCGAGAGGTGGCTGGCCAGGTTCTCCAGTGGGC
CGGTGCCCGGGTACGTGGCCTGGCCGCCGGGCTCCGCCGC