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Detailed information on CNT30102231


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005680, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696596Oryza rufipogonOryza sativa54.2224.9891.3276forward
CNT3067785Oryza rufipogonLeersia perrieri47.1519.5886.25240forward
CNT30596657Oryza rufipogonOryza meridionalis51.2847.891.95261forward

Expression of CNT30102231

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MGPRILLCTRYLLYLTPFYALVMMFQLLAMNV*

>peptide 2 (33 aa)
MIFCYLQLGSCLVGLPLWGCGTTGFCFVLLAFV*

>peptide 3 (35 aa)
MYQILAVLNPFLCTCDDVPIACDECVRLVAFLGTS*

Sequence

>CNT30102231
TTCAGGTGAGGACTCTAGCGTAGAATTGTGCTTCTTGTGTGGTCACTGTTCTGCCGGGGGCGGCGAGGGCAGTAAATGATCTTCTGCTATCTTCAGCTTG
GCTCTTGCCTGGTTGGTTTGCCCTTGTGGGGTTGTGGCACCACCGGCTTTTGTTTTGTGCTTCTGGCTTTTGTTTGAATCTTCCGCTACTACTTGTGTGC
TGTTAGATGGGACCTCGGATCCTATTATGTACCAGATACTTGCTGTACTTAACCCCTTTTTATGCACTTGTGATGATGTTCCAATTGCTTGCGATGAATG
TGTGAGGCTAGTCGCATTCCTGGGGACTAGCTGAGCATGAGTAACGGGTTTTGATCGCTTGAGATAATTAGGGATAGTGCTTTGGATCGAGGCACTGGGG
TATGCCTTGTTTTCTGGTCGCCACCTTCGTGTGGTTGACGGGCATATGACGGAGTAGCCTGGCAAGTTATCTTATGGTTATCTCTTGTGATCACTACTCG
GCATTCCGG