CANTATAdb - search

Detailed information on CNT30102152

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000293, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695689	Oryza rufipogon	Oryza sativa	99.75	75.47	98.75	797	reverse complement
CNT30108677	Oryza rufipogon	Oryza longistaminata	99.37	32.38	97.98	794	reverse complement
CNT30117997	Oryza rufipogon	Oryza nivara	99.75	51.82	98.75	797	forward

Expression of CNT30102152

Peptides detected in this lncRNA

>peptide 1 (49 aa)
RARARELNYQVKSFLANHTSSSQNWVLLNGCCDLLVVRNMGEEPNRKQH*

>peptide 2 (44 aa)
MTKIGLYIRNLDLGLVSLRPIRGPQNLGFAPTSSPGHSSTYINS*

>peptide 3 (40 aa)
MVVVIYLLLGIWERNQIASSTSSADLMKSMLFTPEGKRGK*

Sequence

>CNT30102152
AGAGCTCGAGCTCGTGAACTTAATTATCAGGTAAAGTCATTCCTAGCTAATCATACAAGTTCTTCTCAGAATTGGGTGCTACTAAATGGTTGTTGTGATC
TACTTGTTGTTAGGAATATGGGAGAGGAACCAAATCGCAAGCAGCACTAGCAGCGCTGATTTGATGAAGTCAATGCTCTTCACTCCGGAGGGCAAACGGG
GCAAATGAGTACTTGTTGGAAAGATCTTGTCGTCTACTTTCAGCTATGTGTGGCCTCACCATCAAGTTTGACCTAGGCTGCTCAGAATGACGAAAATAGG
TCTTTACATCAGAAACTTGGACTTGGGCCTTGTATCATTACGGCCCATTAGGGGTCCACAAAACCTAGGGTTTGCTCCCACCTCCTCTCCTGGTCATTCC
TCCACCTATATAAACTCCTAGCAGCCACCATTTTGCACCTTGGGTTTTGTTTTGATGTAAGTTTAGCTGCAGCTACTTCCTTGTACTCGCGTGTGTCGGC
TAGACCACCCGGATACTTGTATTCAGAACCCCATTTTGGTTTGTTTAAGTTTCATCATTTGACAAGTGCCGTGAGCTGTTTCCTTGTCAAGTTGTTCTTG
CTTGTTTTTCGATTGCTTGCAGGTTCAAGGTTGTTCTTGGCACGGCAAGAACAGCAACAACGTGGAGTCGGTGTACCGGTTGCTAAGGCGCAGCACCCCT
GTGGTAGTTGTAGTCGGACCGCCAACGTCGTATCCTTCCCCAAATCGAAGTTTATCCTCCTCTCATCGAAAGATTGGGAACCCCCGTTGCTGCATCAGA