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Detailed information on CNT30102128


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673891Oryza rufipogonSetaria viridis30.436.8295.45176forward
CNT30515355Oryza rufipogonJuglans regia32.8230.8981.05190forward
CNT30304990Oryza rufipogonTriticum aestivum27.4663.3588.68159forward
CNT30400439Oryza rufipogonTriticum turgidum21.0746.0492.62122forward
CNT30567058Oryza rufipogonActinidia chinensis23.4937.7888.24136forward
CNT30588696Oryza rufipogonMusa acuminata23.1449.8189.55134forward
CNT30443761Oryza rufipogonAegilops tauschii21.0725.6891.8122forward
CNT30256504Oryza rufipogonAvena sativa27.1236.5190.45157forward
CNT30669889Oryza rufipogonTriticum dicoccoides27.4662.688.05159forward
CNT307903Oryza rufipogonZea mays32.4748.9692.55188forward
CNT30344605Oryza rufipogonEragrostis tef28.57594.55165forward
CNT30370487Oryza rufipogonOryza glumipatula38.3423.2299.55222forward
CNT3034379Oryza rufipogonTheobroma cacao20.0314.8784.48116forward
CNT3058384Oryza rufipogonAmborella trichopoda27.1232.9184.08157forward
CNT30110238Oryza rufipogonOryza longistaminata42.8335.9995.16248reverse complement
CNT30576871Oryza rufipogonOryza barthii90.8561.1699.62526forward
CNT30580151Oryza rufipogonEchinochloa crusgalli50.7855.7992.18294forward
CNT30497042Oryza rufipogonDigitaria exilis34.7225.2893.53201forward
CNT30551236Oryza rufipogonOryza brachyantha39.7223.1296.09230forward

Expression of CNT30102128

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVLGMMMSPMLLCHGSERSRGGRRRRRGTSSSRGPSPWCAGARRRRWRRTR*

>peptide 2 (35 aa)
MAPGCRGTWPGRRAPPPTPAPAPSCPAPAPPAPTPQ

>peptide 3 (34 aa)
MDGFTREHPLLKLYITRPTSSCLPADHCVRTRAQ*

>peptide 4 (78 aa)
SINITKSTYHTRSSLTKTSLISCLIQKLRWTDSQESTLYLSFTLQGQPAAACRPTTACARARNNQPITHSTHAHKNHP*

>peptide 5 (58 aa)
MVRWCSAKAMATNSMTRIVGSVPHGTGLPRYVAWPPGSAAHSCACTQLPSPSASGTNTP

Sequence

>CNT30102128
CATCAATCAATATCACCAAATCGACGTACCATACCAGATCGAGTTTAACTAAGACCAGTTTGATTTCGTGTTTGATACAAAAATTAAGATGGACGGATTC
ACAAGAGAGCACCCTCTACTTAAGCTTTACATTACAAGGCCAACCAGCAGCTGCCTGCCGGCCGACCACTGCGTGCGCACGCGCGCGCAATAATCAACCA
ATCACACACAGTACGCACGCACATAAAAACCACCCATAGCCTTCACGTACGCCCGGACGCACGCACCGGTTCGTGCCAAGCTCAAGGGTAGATGGTTCTC
GGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCCGAGAGAAGCCGAGGGGGTCGAAGGCGCCGCCGGGGTACTTCTTCTTCTCGGGGTCCTTCTC
CATGGTGCGCTGGTGCTCGGCGAAGGCGATGGCGACGAACTCGATGACCAGGATCGTCGGCAGCGTGCCCCATGGCACCGGGTTGCCGAGGTACGTGGCC
TGGCCGCCGGGCTCCGCCGCCCACTCCTGCGCCTGCACCCAGTTGCCCAGCCCCAGCGCCTCCGGCACCAACACCCCAG