Detailed information on CNT30102121


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F1U0|PER22_ORYSJ, E-value = 5e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673938Oryza rufipogonSetaria viridis20.8968.7584.85165forward
CNT30307233Oryza rufipogonTriticum aestivum27.3432.8888.43216forward
CNT30554242Oryza rufipogonOryza glaberrima39.6265.2199.68313forward
CNT30688208Oryza rufipogonTriticum urartu21.0143.4686.75166forward
CNT30348098Oryza rufipogonEragrostis tef26.7125.9587.68211forward
CNT30368355Oryza rufipogonSorghum bicolor32.6645.8389.15258forward

Expression of CNT30102121

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVYIIIYKRRTLLHFVVIHYQTSISRFVSSCVLISHRRIGSQGVGEDGDHRK*

>peptide 2 (70 aa)
MRLRKNWHWARPMVWAPDSAVMSRAERPWLPNMLMSVARLDPGPGRLLFAALWLAVRESFRPSATLHVGPP

>peptide 3 (35 aa)
FFVLFFNSKDCIIMHHKKKYIVVVAIIYHGIYHHI*

>peptide 4 (44 aa)
MAETKSEENWEGLVLYCLTRPSCEPPLKSSWSEWSRPRCDTRFW*

Sequence

>CNT30102121
TTCTTTGTCCTTTTCTTTAACAGCAAGGATTGTATTATCATGCATCATAAAAAAAAATACATTGTCGTGGTTGCGATAATTTACCATGGTATATATCATC
ATATATAAGCGTCGCACATTATTACACTTTGTGGTAATACATTATCAAACAAGTATTTCACGTTTCGTCTCTTCTTGTGTTTTGATATCTCACCGGCGCA
TTGGTTCCCAGGGCGTCGGCGAAGACGGTGATCATCGGAAATGATCACCTGCAAATGCAATGCGATGGGAATTGGGGTTTATCATCCTTAATTAGTTCAC
CTTCCTGCAGTTGAGCCTGACCTCCGTGGCGGTGCCGGAGGACGGCAGCAGGTTGCCCATCTTGACCATGGCGGAGACGAAGTCGGAGGAGAACTGGGAG
GGGTTGGTGCTGTACTGCCTGACGAGGCCGTCCTGCGAGCCGCCATTGAAGAGCTCCTGGTCGGAGTGGAGCAGGCCGCGCTGCGACACGAGGTTCTGGT
AGTAGGCGTTGTCGAAGGCGTCGGGCGTCTGCACGTCGAACGGCGCGAGGTTGGCGTTGATGTTGCGCTCGGTGTAGATGCGGCTGCGGAAGAACTGGCA
CTGGGCGCGGCCGATGGTGTGGGCGCCCGACAGCGCCGTCATGTCGCGCGCCGAGAGGCCCTGGTTGCCGAACATGCTGATGAGCGTGGCGAGGCTCGAC
CCGGGCCCCGGCAGGTTGCTGTTCGCCGCGCTCTGGCTCGCCGTGCGCGAGTCCTTCCGCCCCAGCGCCACGCTCCACGTTGGCCCACCC