Detailed information on CNT30102110


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000044, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694650Oryza rufipogonOryza sativa62.3570.4194.881290forward
CNT30553269Oryza rufipogonOryza glaberrima62.8372.6783.231300forward
CNT30596363Oryza rufipogonOryza meridionalis48.7299.3194.051008reverse complement
CNT30371142Oryza rufipogonOryza glumipatula54.7684.1195.321133forward
CNT30109162Oryza rufipogonOryza longistaminata62.2574.4196.271288forward
CNT30576376Oryza rufipogonOryza barthii52.8841.195.81094reverse complement

Expression of CNT30102110

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MERAETSASDGQSLLWPKEIQLLERGGRQ

>peptide 2 (36 aa)
MSVGRPSSSALVREKLEDRRMNFGASVQIHKSKVRL*

>peptide 3 (30 aa)
ICVGARQVIIPPLEHNYPIFLHFILRISHS*

>peptide 4 (94 aa)
MNGTLSSNDLGCCFICTGMHWEPLNACSSSESETRRDTMQAFFPRAEEIDSPRLGGKPWLPQDGIPVTLAGTCDEKIFRVKLCNLDIRPPNPEC*

>peptide 5 (57 aa)
MNQDIVSPPLLWLLWRRIVVRFEVRKGDVCGQTFFISIGEREARRSQDEFWSVSPNP*

>peptide 6 (55 aa)
MLINNVVPLYSGSYVSPHEGGKYMPRRANVIFTEAQVNILIIARCVCEFMKTWLR*

>peptide 7 (53 aa)
MLNEHRQQTHWDQPWNSESQLAKQLWSEQKLLPQTVNLSCGRKKYSFLRGAVGK

>peptide 8 (48 aa)
MTKLIIIGKSWTAGKAYIFCSMNILKTIRIAVLMDLSIGTHMVLWLEI*

>peptide 9 (45 aa)
MNIVSKHIGINLGTLSPNLPSNYGASRNFCLRRSISPVAERNTAS*

>peptide 10 (41 aa)
MILAAASSVRACIGSPSMHARALNLKRAGTPCKPSSHGRKR*

>peptide 11 (36 aa)
FALEQGKLLFLPLSIIILYFYILFYALAIHDFECII*

Sequence

>CNT30102110
ATTTGCGTTGGAGCAAGGCAAGTTATTATTCCTCCCCTTGAGCATAATTATCCTATATTTCTACATTTTATTCTACGCATTAGCCATTCATGATTTTGAA
TGCATAATCTGAACATATAGCAAACCAGTTATATGCTAGCTTTTGCTTAGCCCTGCCTAGTTAGATTGCATAAAATATAATGAACTTAGATTGGGACAGT
ACGTAAGATTTGGTTGATTTCCAGGTAGCTAGTACTGTCTCGGTCAATATAAGTTTACCAAGTACTTATGTCAAACGAACGAGTACGACCACAGCTTCTA
GAACGGGGACAGACCTAGATATTATGTTAATTAACAATGTGGTACCTCTGTACAGTGGTTCTTATGTAAGTCCTCACGAAGGAGGCAAATATATGCCGCG
AAGGGCAAATGTGATATTTACCGAGGCGCAAGTAAATATCTTGATTATCGCGCGATGTGTGTGTGAATTTATGAAAACTTGGTTGAGATGACGTGGGATC
TCTCATCCTGTTCTCTCTAAAAACCCCGGGAAGGCCATAACTCCTCTCGCTGCTGATAACGTTACATTCAAAGCGCATGGGGACTAGAGTTCATGGAACA
GGTGCCACAATTGTTAATAACCTAATACTGGGCCATGACTAAGCTAATCATTATTGGCAAGTCGTGGACTGCGGGTAAAGCGTACATCTTCTGCAGTATG
AATATCCTTAAAACTATTCGAATAGCCGTGCTCATGGATTTGAGCATCGGGACTCATATGGTACTTTGGTTAGAAATATAATTCAAGATTTTCTTAAATA
CTGTTGCATATCAAACATTTCAGGAGTTCTACCTCTTTATTCTCAGCCTTCTGCAAGTAAATCTAGCTCTACATAGATATTACCTCTCATGCATTCATTG
TTGAATAATATAATAGCTTGTTGAGTACGTTGTACTCACCCTTGCTTCAACCCCTCTTTTTTAGAGTCTATTTGGAGTTTTTGCCAAAGCTGGGAGTTCA
ATCACATAAGTTAGTTCCCTTTAAACCTAATCTTTAAGTCTAGTATAGTTAGACGGTTTAATTCTATAGTAAAACGGCAGAGTTGAGTCATCGTATAGCT
TCTGCTGTAATAGTTAGCCACAAACTTGTAAATGTCCTCTTATTTTATATAAAGATATCTCCTTTGGAGTCTTTACCAAATGTATGCGATGAAGATCCAG
ATTGTTGAACCTGTATCAATCTACTGATCTAGGGCTTGATATAGTTAAACATGTCGATTTCTGAATCGTAAGTTTTGGGATCCGACATCAGGCTCCCTCC
TACAGGGAAGCGGGAATTCCCGGAAGCGAACACCATCATCTTCTGCACCGTACTAATAGTCGTACGCACGGGCAAGCTTGTAGTGAAGGTCTTCCAGGGT
GTCAATATGAATCAGGACATTGTAAGTCCACCCCTCCTTTGGCTCCTCTGGCGGCGGATTGTGGTGCGGTTTGAGGTCCGGAAGGGGGATGTCTGTGGGC
AGACCTTCTTCATCAGCATTGGTGAGAGAGAAGCTCGAAGATCGCAGGATGAATTTTGGAGCGTCAGTCCAAATCCATAAGTCAAAAGTGCGGTTGTAGT
TCCTGCGGCGGGAATACTCTTCAACATAATGAACGGAACACTTTCTTCCAATGATCTTGGCTGCTGCTTCATCTGTACGGGCATGCATTGGGAGCCCCTC
AATGCATGCTCGAGCTCTGAATCTGAAACGCGCCGGGACACCATGCAAGCCTTCTTCCCACGGGCGGAAGAGATAGACTCGCCCAGACTTGGTGGCAAGC
CGTGGCTGCCTCAGGATGGCATCCCTGTCACTCTGGCTGGCACATGTGATGAAAAAATCTTCAGGGTGAAACTTTGTAATCTGGATATCCGACCGCCTAA
TCCGGAATGCTGAATGAACATCGTCAGCAAACACATTGGGATCAACCTTGGAACTCTGAGTCCCAACTTGCCAAGCAACTATGGAGCGAGCAGAAACTTC
TGCCTCAGACGGTCAATCTCTCCTGTGGCCGAAAGAAATACAGCTTCTTGAGAGGGGCGGTCGGCAAGG