CANTATAdb - search

Detailed information on CNT30102034

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005756, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694231	Oryza rufipogon	Oryza sativa	29.85	100	100	263	reverse complement

Expression of CNT30102034

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MLSPHRFTHRSQYGHIHIHQYIDHSKINKFNAYIFTKSSQKSKLGSVTAVRPNPR*

>peptide 2 (42 aa)
TNTHITNPCISNDCPVNNQYITTSQAHLTSNIAHAITTQVHS*

>peptide 3 (36 aa)
MSIIECSLMVFWTSRCELKGTKSLVKQVKCVQKKKE*

Sequence

>CNT30102034
TACCAATACCCATATAACAAACCCATGTATCTCAAATGATTGCCCGGTTAACAATCAATACATCACAACTTCACAAGCCCACTTAACATCCAATATAGCA
CATGCTATCACCACACAGGTTCACTCATAGATCACAATATGGTCATATTCATATACATCAGTACATTGACCATAGCAAAATAAATAAGTTCAATGCATAC
ATCTTCACCAAATCTAGCCAGAAAAGCAAACTAGGTTCAGTTACAGCAGTTCGACCAAATCCTAGATAGAAACATAAGATCGTACATCACTGACCAAGTC
CACACTGAGTCCAACCACAATTAACTGATCAAAATAAGATAACACGTCCAAATAGTTCAAAATTCACTGAAGTCACATGTCCAAAGCATACCAACCTCAA
TGTAGACCAGGCATCTGTCAAACAACAAAATTGAGGAGCATTAAGCTTCACTTTACATAATGTAAATTTGAAAAATCAACACCAAATTCAGCTTACATCT
AGATCATGCAGCCTACATTTGATTCACAGTAATTGTTGATGAGTGCTTAACTTTGCACTATATACTACAAATACTAGTATTTCATTTGGATACTAAGATG
ACAGTGGAAAAATAATATGCATGAGTATTATTGAATGTTCGCTCATGGTATTCTGGACATCTAGGTGCGAATTGAAAGGGACTAAGTCTCTTGTCAAACA
AGTCAAGTGCGTTCAGAAAAAGAAGGAATAAAGAACTACTCAATACAAAGGAGGTACGCATACCTGTGGGCCTCATCGTCATGTTCAAGCGGTTGTAATT
TGTCACGCCCGGAAATTCACTAGTAATTTCCGAACTTATTTGTGCATAAAACCCTCGTCCAGAAATCAGCCGAGGTACACA