Detailed information on CNT30102027


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596440Oryza rufipogonOryza meridionalis19.4354.17100143forward
CNT30370463Oryza rufipogonOryza glumipatula39.8148.4396.59293forward

Expression of CNT30102027

Peptides detected in this lncRNA

>peptide 1 (38 aa)
ELTKQVIHPANKPMHKLKQIKAIKHALFCFHQQFLADE*

>peptide 2 (38 aa)
MGLLRPYTSIDRFDARLQATARRRWPAAGGDQKDGTTP*

>peptide 3 (77 aa)
MSTTWDYYAPTHRSIDLMQDYKRRRGGGGRRRAAIRRTGRRRSRSRACRRMGRRRGRWRCRSCRTAWRRRRRRRGRR*

>peptide 4 (76 aa)
MAAPAPAPLGTTLSAWGKRANSTLRLSAPCCCRCWWWWCSAAALSSTASASAPAAATPNSMASAATAAAAAEPMGAT

Sequence

>CNT30102027
GAACTAACAAAGCAAGTGATTCATCCTGCTAATAAGCCCATGCATAAACTTAAACAGATCAAAGCCATCAAACATGCCTTATTTTGTTTCCATCAACAAT
TCCTAGCTGATGAATAATACCATATAGTTGTGATTTATTCGTTGGGGGGAGCTAATACAATATAGATGATCTTGCTGATCAAAAAAATAATTACCACTAA
GTAGTAAGCACGTAATTAGTAGCAGTAGTAGTGTACAAAACTAGCGTGAGCTAGCTCAAAATGAGTACTACATGGGATTACTACGCCCCTACACATCGAT
CGATCGATTTGATGCAAGATTACAAGCGACGGCGCGGCGGCGGTGGCCGGCGGCGGGCGGCGATCAGAAGGACGGGACGACGCCGTAGCCGAAGTCGAGC
ATGTAGGAGGATGGGACGGCGGCGGGGTCGGTGGCGGTGTAGGAGCTGTAGGACTGCTTGGCGCCGCCGACGCCGACGCCGAGGCCGCAGGTGAAGTCGA
GCTCTATGGCGGCGCCGGCGCCGGCGCCGTTGGGGACGACGCTGTCGGCGTGGGGGAAGCGGGCGAACTCGACGTTGAGGTTGAGCGCGCCGTGCTGCTG
CCGCTGCTGGTGGTGGTGGTGCTCGGCCGCGGCCTTATCCTCCACCGCCTCGGCCTCGGCCCCGGCGGCGGCGACGCCGAACAGCATGGCCTCGGCGGCC
ACGGCGGCGGCGGCGGCGGAGCCGATGGGCGCGACG