Detailed information on CNT30101951


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007432, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693509Oryza rufipogonOryza sativa86.6594.891001876forward

Expression of CNT30101951

Peptides detected in this lncRNA

>peptide 1 (55 aa)
TIPNPGVHHSSPSTRFLVPPPPRAAAPQTIEPPAAALRANQAPTAVPPNAPSSPT*

>peptide 2 (61 aa)
MLSILPKECCVLPFPDLTCISEINIWRLYNMLMERGPGYRKMEDGAAKFFTFWLEIIFFLH*

>peptide 3 (67 aa)
MPHPAPRSRTTPPSKPRPPRAHPHRGAPAFVPTFDGRLHPLLQVERYTRSRSSVCDPRLLLLGRHCG*

>peptide 4 (31 aa)
MFCLLCLREICLTVACLISVLYYHEYKKSVNP

>peptide 5 (30 aa)
MVRIRVRCRASDRAWMQMIALSQQLVGSLS*

>peptide 6 (42 aa)
MPLCSLCTKQTNIVLQTLLNRHVVHPSKRVLCAAISRFDLYL*

>peptide 7 (39 aa)
NNPQSWRPPLIPIDALPSPPAPARRRAANHRAPRRRAAR*

>peptide 8 (29 aa)
MPELERLQNIMEAIHGPDSTKHSAWSGSG*

Sequence

>CNT30101951
AAACAATCCCCAATCCTGGCGTCCACCACTCATCCCCATCGACGCGCTTCCTAGTCCCCCCGCCCCCGCGCGCCGCCGCGCCGCAAACCATCGAGCCCCC
CGCCGCCGCGCTGCGCGCTAACCAGGCCCCCACCGCCGTGCCGCCCAATGCCCCATCCAGCCCCACGTAGCCGCACCACGCCCCCATCCAAGCCGAGGCC
GCCGCGGGCACATCCCCATCGAGGAGCACCTGCCTTCGTCCCCACCTTTGATGGCCGTCTCCATCCTCTGCTCCAGGTGGAACGCTATACACGAAGTCGT
AGCTCCGTTTGTGACCCCCGCCTACTCCTCCTAGGACGCCACTGTGGCTGAGGCAAGCGACTCCGCTCGGCCATATCTACATCAGTGTGCTTCGTAAACG
AGAGGTCAGTAAAGCAACTCCATGTTTCCATCTGTGGCTCTACAACTTTCCACAAAGAACCATGGTATGTTCATAGTTGATATGCATTAGAATTAGAGAT
TTTAGTATCAGGGTAAATTAGTTCTCTTTGGTCAGAAGTTTCTTGGTTGGGGGGAGAACATATTTTGAATTTGTTGAACCTCTTGCAGTCCCGTTTGTGC
TTGATGGTACAGATTATTGTGAAGATTTATTTGCCAGGAGTCATCTAGATATTCTAATGCCACTGTGCAGTCTTTGTACAAAGCAAACGAATATAGTGTT
GCAAACTCTATTGAATCGACATGTTGTCCATCCTTCCAAAAGAGTGTTGTGTGCTGCCATTTCCAGATTTGACTTGTATCTCTGAAATTAATATCTGGAG
ACTGTATAATATGCTAATGGAAAGGGGACCAGGTTACAGAAAGATGGAGGATGGAGCGGCTAAATTCTTTACATTCTGGTTAGAAATTATATTCTTCTTG
CATTAAATTATATTCTTCTTGCTGAATTGAAATTCAGTTACTTTCTTGCACTGAACAGTTATGCACACATTTCTACTTGGTTAATTATAGGTGCTATTTG
ACTAGGCCGCTGTGATAGAAACCAGTAATTGCCACATGGCTTGAGATCATCTTGTAAGGGGGTGGCACATGCAGATGGTGCAACATTGCTGTATGCAGGA
TCTCTGGATTTTTGTTTTTTCCCTTTAGTTCTTGTTTTTATGCTCTTGCTTCAATCTGTGCTATCAAATTGCTTTGTAAAGAATACATTTCTGCACTAAG
ATTCACAAGCAGTTGGTTCCATGACAGTATCCTATCTCCTGTATCTGTTTTAGATAACCAATTTTGCCTCTTCTAAACTGTAATCAGGGGTAGACCATAA
ATTAAAGATCGAGTTAAGACTGAAGATTGCTAACACCCTAATCAGAATGGAGGAGTTGTTCTGTTAATTAATTGCTGCTTGCATCTTCTTCTATTGGTTG
TGTTTTGCACATATTGTGTGGATTGAAACTCTAATTCAGTTTGCTACGGCGAATAAGATTTCAAATTTTCCTTATGGGAGAGAGGATAAGATTCAGTTTT
TTTTCCAAAAATATATTAATTTCCTGCCAATGCAACACAAGATGACAATCATTTCTTCAAGTGCATAATATTTTAATGTTCTTTTTGCAGAAAATCATTG
TTTAAACTATTTGGATATCATGCCTGAATTAGAGAGGCTACAGAACATCATGGAAGCAATACATGGACCTGATAGCACCAAGCACTCCGCATGGTCAGGA
TCAGGGTGAGATGTAGGGCTAGCGACAGAGCTTGGATGCAAATGATTGCTCTATCCCAACAATTGGTTGGATCTCTGTCTTGATTGAAGGCATATAATGA
TCATGCCAAAGGACTGGGATTGATTTATGTTGTCAATGCACACATTTGGTTAGTCAGCCACTAAGATGTGTCTATTACCTTTCCAGCAGAGGTTGTAAGA
ACTAAGGCTCATTCTGCTTCTCTTGAGTTATGTGTAGCTAGCGACTTTGTAGATCCATTCATGTTGTGTTCTTGCCTCGTGATGTTCTCATTAATACCGG
GGAATCTTCAACTTATGTTCACATGATATTTTTCTATGGTTCTAATTTATTTCTGTGATGCTTGCCTATGTTCTGCCTGTTATGTTTGCGTGAAATCTGC
CTGACTGTTGCTTGTCTCATATCCGTGTTGTACTATCATGAATATAAGAAATCTGTAAATCCAGG