Detailed information on CNT30101935


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193719Oryza rufipogonSecale cereale19.8625.4587.0685forward
CNT30389102Oryza rufipogonTriticum turgidum17.0634.690.4173forward
CNT30470896Oryza rufipogonSaccharum spontaneum21.0321.3388.8990forward
CNT30678966Oryza rufipogonTriticum urartu21.2617.7486.8191forward
CNT30719808Oryza rufipogonTriticum spelta21.2621.3686.8191forward
CNT30148777Oryza rufipogonBrachypodium distachyon20.569.8888.6488forward
CNT30576573Oryza rufipogonOryza barthii39.9561.96100171forward

Expression of CNT30101935

Peptides detected in this lncRNA

>peptide 1 (33 aa)
VSSKRNGMKAEVDYIKKPGTHEEMEQEYMMRSP*

>peptide 2 (49 aa)
MQPGDDDDRFSCRSSRSSRCSWCHTCSRCRSRSCRRSKTSSSWEGEGLN*

>peptide 3 (47 aa)
MMIDDPSKLARDPSNIDRHTHTLTTTTTVLFSSIHTINPHAAGRRRR*

Sequence

>CNT30101935
GTAAGCAGTAAGAGAAATGGGATGAAAGCAGAGGTAGATTATATTAAGAAGCCTGGCACGCATGAGGAGATGGAGCAGGAGTACATGATGAGATCACCAT
GATGATAGATGATCCATCCAAGCTAGCTAGGGATCCATCCAACATTGATCGACACACGCACACACTGACAACGACGACGACGGTTTTATTTAGCAGCATC
CATACGATAAATCCTCATGCAGCCGGGCGACGACGACGATAGATTCAGTTGCAGGAGCAGCAGGAGCAGCCGCTGCAGCTGGTGCCACACTTGCAGCCGC
TGCCGCAGCCGCAGTTGCCGCCGCAGCAAGACATCTTCTTCTTGGGAGGGCGAAGGACTTAACTAAGCAAGAAGGAGATAGATGTTGTTGCTGATTGAGC
TCAAGAATTGCTTCTTGCTTTGGTTGCT