Detailed information on CNT30101925


BLAST search results

BLAST vs Swiss-Prot:
sp|P27061|PPA1_SOLLC, E-value = 1e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693568Oryza rufipogonOryza sativa10099.33100298forward
CNT30297215Oryza rufipogonTriticum aestivum36.2444.6385.19108forward
CNT30553696Oryza rufipogonOryza glaberrima95.396.698.59284forward
CNT30443723Oryza rufipogonAegilops tauschii37.5822.7683.93112forward
CNT30662369Oryza rufipogonTriticum dicoccoides37.5821.7583.04112forward
CNT30596301Oryza rufipogonOryza meridionalis32.5527.7191.7597forward
CNT30370322Oryza rufipogonOryza glumipatula74.8349.7882.51223forward

Expression of CNT30101925

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMLCASTAVLTLPQYGGGSTSPSPLLSSE*

>peptide 2 (95 aa)
LGLVGQGGEGGLIDVEHPDLLAMAGELEALGVGDGLVDHHVGVAAVSLAGQVVGDVLGAVRRHRLPADDVVRLHRRPHAAAVRRRINLAVAIVEQ*

Sequence

>CNT30101925
GCTTGGCCTGGTAGGGCAGGGTGGAGAGGGCGGTCTCATCGACGTCGAACACCCAGATCTCCTTGCCATGGCCGGAGAGCTTGAGGCTCTCGGCGTAGGC
GATGGCCTCGTTGATCACCACGTCGGAGTCGCGGCCGTATCGCTCGCCGGTCAAGTAGTCGGAGACGTACTCGGCGCAGTCCGCCGGCACCGTCTTCCAG
CCGATGATGTTGTGCGCCTCCACCGCCGTCCTCACGCTGCCGCAGTACGGCGGCGGATCAACCTCGCCGTCGCCATTGTTGAGCAGTGAGTGAGCTGC