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Detailed information on CNT30101916

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693441	Oryza rufipogon	Oryza sativa	81.17	100	100	556	forward
CNT30553834	Oryza rufipogon	Oryza glaberrima	95.18	96.31	98.31	652	forward
CNT30596216	Oryza rufipogon	Oryza meridionalis	95.62	100	99.39	655	forward
CNT30576334	Oryza rufipogon	Oryza barthii	91.68	100	98.57	628	forward

Expression of CNT30101916

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MQIGKKNESKKLGKSYNNLLPTSDHFKAPNLN*

>peptide 2 (37 aa)
MTLPAQYRFPKWMARLLVSDFQDLISRTRNLIMTSKQ*

>peptide 3 (30 aa)
MYLKMKMIKYFFSLTLHFCFLSTYNQQNSW*

Sequence

>CNT30101916
AGGGCATAGAATGAAATTTTCTTTATGTACCTCAAGATGAAAATGATAAAATACTTTTTTTCCTTAACATTGCACTTCTGCTTCCTATCTACATACAATC
AACAGAACAGTTGGTGATTCTTCTATGCAGATAGGGAAAAAAAATGAATCAAAGAAGTTGGGCAAAAGCTACAACAATCTACTTCCAACTAGTGATCATT
TTAAAGCTCCAAACTTGAACTGAAGCAGCAAAATGATTACCGGTTGCTTACATGGAGAATGAATTTCATTAACAAATCTCAAATGCTCAACAATAGGTAT
TGTTGATCAACCGTGCCTTGCTGCTCAGACTTCCAGCCTTCCAGCCTTCCTGATCCAGTCAATCTTACAGAGGATTAACCACAGTTTGTGTTGCATTGGT
TATCACCGGAGACCTTAGGACTTAAGCCTTGATGACATTACCAGCACAGTACCGATTTCCGAAATGGATGGCCAGGTTGCTGGTAAGTGATTTCCAGGAT
CTTATCTCTAGAACTAGAAATCTCATCATGACATCGAAGCAATGAGATCCATACATGATGGGCCTTGTCCTCAGATCAACTGCCAAGCAATAATTGATTA
AGAACAGTTGCATTATTTTAACTCTTTACACTCATTGGATTTTCTTGGCTTCGTCTTGGATCTTCTCCACTTTGTCTTGGACTAC