Detailed information on CNT30101900


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005293, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553765Oryza rufipogonOryza glaberrima47.246.8499.84608forward
CNT30596278Oryza rufipogonOryza meridionalis47.249.0397.7608forward
CNT30576310Oryza rufipogonOryza barthii50.1631.6898.45646forward

Expression of CNT30101900

Peptides detected in this lncRNA

>peptide 1 (71 aa)
AKCESLYSSSLCLALHARPPIVVSSLHPSSSSIGGVRLPPSQLRFQMSPRRRSREKLTVRVCHDRLFCPAI*

>peptide 2 (78 aa)
MKIPGLLDGSESNLHEFCFCRLKQHSSVKCLLQFQKHSGWYFDVVLETYLMIRLLRPLLASLLLQCSSYAQTPSVSLL*

>peptide 3 (56 aa)
RSANLCTLLRFASLCTHGHPSSSPVSTPLLPPLVVYACLRLSFVFRCLLVVEAGRN*

>peptide 4 (63 aa)
REVRIFVLFFALPRSARTATHRRLQSPPLFFLHWWCTLASVSASFSDVSSSSKPGEINRACLP*

Sequence

>CNT30101900
CGCGAAGTGCGAATCTTTGTACTCTTCTTCGCTTTGCCTCGCTCTGCACGCACGGCCACCCATCGTCGTCTCCAGTCTCCACCCCTCTTCTTCCTCCATT
GGTGGTGTACGCTTGCCTCCGTCTCAGCTTCGTTTTCAGATGTCTCCTCGTCGTCGAAGCCGGGAGAAATTAACCGTGCGTGTTTGCCATGATCGATTGT
TTTGTCCAGCAATTTGAGCGAACAGTAAAGAATTACTGAGCCATGTCAGAGTGTGTTCTGAACTTCTTGTTGGAAGAGCAGCGAGGCGCTGTGGATGAGG
ATCGATTTTAATGATGAATCCATTATTATTGGCTTCGATTAATCCACTCGAGTGTGGAAGTTAATGATGTCCTCTTAATCTGTGACACACGTCACCTGGA
ACAGCCTTTCCACATTCAAATTTGGGACAATTTGCAACTTCAGAGTTCAGACTTCATGCCATGGAGGAGAAACGTCCAGAGGTATTCCGGCTAGTTTTAT
AAGGTCATGAGATAATTATATAGAATCCGGCAGCAGTTTTTCGAGTTGAAAAATTGAACTAGAAATTCCTGGAGAGGCCACATTTTACGTGAGAGTGAGA
CACGGCGGCGGCGGCAAACCCCGGCAGGCCGGCAAAGCGGCAGCGGCGGCGAGGTCACCTACACCGTCCGATCGGATACGCGCGGTTCAGATTGGGAACA
GTTGAGATTTTAGAGGGAACCAGGTTTATTATTGATGGGAATAATCACATTTCATGCTGATACAAAAGAATGGCGACAGCATAAGGCCGTGATACGGTAA
CAACATTTACACTCATACGGGTACATCAGTTTGTGCATTTCTGCCCTGGGACGCTTCTGTCCAAGGCGCGCACCAAATACCTCATCAATTTTCTTCCGTA
TTGTTCACTTATTCTGCTTAGAGCAGAAGTTTTCTCAGGAAGTCTTCGGAGATGCTATTCTAAAACCATCATCTCCACAGTACTGAGGAGACATGAAAAT
ACCAGGTCTCCTCGACGGCTCTGAGAGTAATTTACATGAGTTTTGTTTCTGCAGATTAAAGCAACATAGCTCGGTTAAGTGTTTGCTACAATTTCAGAAA
CACTCTGGATGGTATTTTGATGTAGTTCTTGAAACCTACCTTATGATTCGATTGCTGCGACCCTTACTGGCTTCATTACTTTTACAATGTTCCTCATATG
CTCAAACCCCATCAGTATCACTCCTATGACATAAAGAAAGCTTAGTTGCAGCTTGGCAAAAATAAGAGCCCCGGTTTCTGATAAAGAC