Detailed information on CNT30101899


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005178, E-value = 2e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693834Oryza rufipogonOryza sativa80.8992.021001164forward

Expression of CNT30101899

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVRIRVRCRASDRAWMQMIALSQQLVGSLS*

>peptide 2 (31 aa)
MFCLLCLREICLTVACLISVLYYHEYKKSVNP

>peptide 3 (34 aa)
WRPPLIPIDALPSPPAPARRRAANHRAPRRRAAR*

>peptide 4 (42 aa)
MPLCSLCTKQTNIVLQTLLNRHVVHPSKRVLCAAISRFDLYL*

>peptide 5 (67 aa)
MPHPAPRSRTTPPSKPRPPRAHPHRGAPAFVPTFDGRLHPLLQVERYTRSRSSVCDPRLLLLGRHCG*

>peptide 6 (52 aa)
MLSILPKECCVLPFPDLTCISEINIWRLYNMLMERGPGYRKMEDGAAKFFTF*

>peptide 7 (48 aa)
MERLNSLHSENHCLNYLDIMPELERLQNIMEAIHGPDSTKHSAWSGSG*

>peptide 8 (51 aa)
PGVHHSSPSTRFLVPPPPRAAAPQTIEPPAAALRANQAPTAVPPNAPSSPT*

Sequence

>CNT30101899
CCTGGCGTCCACCACTCATCCCCATCGACGCGCTTCCTAGTCCCCCCGCCCCCGCGCGCCGCCGCGCCGCAAACCATCGAGCCCCCCGCCGCCGCGCTGC
GCGCTAACCAGGCCCCCACCGCCGTGCCGCCCAATGCCCCATCCAGCCCCACGTAGCCGCACCACGCCCCCATCCAAGCCGAGGCCGCCGCGGGCACATC
CCCATCGAGGAGCACCTGCCTTCGTCCCCACCTTTGATGGCCGTCTCCATCCTCTGCTCCAGGTGGAACGCTATACACGAAGTCGTAGCTCCGTTTGTGA
CCCCCGCCTACTCCTCCTAGGACGCCACTGTGGCTGAGGCAAGCGACTCCGCTCGGCCATATCTACATCAGTGTGCTTCGTAAACGAGAGGTCAGTAAAG
CAACTCCATGTTTCCATCTGTGGCTCTACAACTTTCCACAAAGAACCATGGTATGTTCATAGTTGATATGCATTAGAATTAGAGATTTTAGTATCAGGGT
AAATTAGTTCTCTTTGGTCAGAAGTTTCTTGGTTGGGGGGAGAACATATTTTGAATTTGTTGAACCTCTTGCAGTCCCGTTTGTGCTTGATGGTACAGAT
TATTGTGAAGATTTATTTGCCAGGAGTCATCTAGATATTCTAATGCCACTGTGCAGTCTTTGTACAAAGCAAACGAATATAGTGTTGCAAACTCTATTGA
ATCGACATGTTGTCCATCCTTCCAAAAGAGTGTTGTGTGCTGCCATTTCCAGATTTGACTTGTATCTCTGAAATTAATATCTGGAGACTGTATAATATGC
TAATGGAAAGGGGACCAGGTTACAGAAAGATGGAGGATGGAGCGGCTAAATTCTTTACATTCTGAAAATCATTGTTTAAACTATTTGGATATCATGCCTG
AATTAGAGAGGCTACAGAACATCATGGAAGCAATACATGGACCTGATAGCACCAAGCACTCCGCATGGTCAGGATCAGGGTGAGATGTAGGGCTAGCGAC
AGAGCTTGGATGCAAATGATTGCTCTATCCCAACAATTGGTTGGATCTCTGTCTTGATTGAAGGCATATAATGATCATGCCAAAGGACTGGGATTGATTT
ATGTTGTCAATGCACACATTTGGTTAGTCAGCCACTAAGATGTGTCTATTACCTTTCCAGCAGAGGTTGTAAGAACTAAGGCTCATTCTGCTTCTCTTGA
GTTATGTGTAGCTAGCGACTTTGTAGATCCATTCATGTTGTGTTCTTGCCTCGTGATGTTCTCATTAATACCGGGGAATCTTCAACTTATGTTCACATGA
TATTTTTCTATGGTTCTAATTTATTTCTGTGATGCTTGCCTATGTTCTGCCTGTTATGTTTGCGTGAAATCTGCCTGACTGTTGCTTGTCTCATATCCGT
GTTGTACTATCATGAATATAAGAAATCTGTAAATCCAGG