« Back to Oryza rufipogon search


Detailed information on CNT30101890


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695847Oryza rufipogonOryza sativa81.1831.3393.99716forward
CNT30554827Oryza rufipogonOryza glaberrima65.9999.4995.53582forward
CNT30108963Oryza rufipogonOryza longistaminata27.8947.7792.28246forward
CNT30576446Oryza rufipogonOryza barthii90.2570.1997.99796forward

Expression of CNT30101890

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MSRHVQDDGFLQEQQMLISEPLYIADVTIWSRSPGVAAHIYFYSSSES*

Sequence

>CNT30101890
CAGAGTAGTGTGGAAGGCAAAAGAATGTCAGCACCAAAATGTAGCTTGAAACCAAGTTGGTATGCTGTTGCATACAAGTAGACAAACATTTCGCTCACAA
TGAAATACTGACAGGAAGTTGCACTATTGGCAAGTAAAAGGAAAATAATAGTGGCAATCCCCATTAAGGGCTTGTTCGGTTGGGCCGTTCTCGGCCGGGA
TCGGAGCCCAATCCCCGTGGAAAATCCCGGCGTGGAAAGGATACCGGCCCACGCAAGTATAGGCGTTCGGTTAAGCCCAGGCGAGATTTTATCCCGGCCC
ACCCCGGTGTTTTCCCCTCGTCATAGGCCGGGAAATATTCAGCTTCTCTGGTGGCGAGGAAAAAAATCCTCTCGACGCAGCGACACAAAGAGAGGGGGCG
CTGCAGCGGGGACAGCTGCACAGCGCAGCGCGACTCCGACGCGACGGCGACGGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGCCACCTTCTCC
CCGGCTTTGGGAGGAAGTCTGAGAGGATGGTAGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTTGCAGGAGCAACAAATGTTG
ATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGTCCTGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATA
GTTTCATCTTTTTCCTTTTTTATTGTCAAATTTCACTTCTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCC
TCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATATTTTTGTTTTAATGATTAATCAATGTGGTTTTCGCGTAA