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Detailed information on CNT30101875

BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 3e-39

BLAST vs NONCODE:
NONGMAT001327, E-value = 3e-33

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696576	Oryza rufipogon	Oryza sativa	41.05	65.63	94.93	296	forward
CNT30670612	Oryza rufipogon	Setaria viridis	28.29	50.5	97.06	204	forward
CNT30522839	Oryza rufipogon	Setaria italica	39.67	48.89	95.1	286	forward
CNT30288901	Oryza rufipogon	Triticum aestivum	39.25	60.21	96.47	283	forward
CNT30387206	Oryza rufipogon	Triticum turgidum	39.25	50.72	96.47	283	forward
CNT30565712	Oryza rufipogon	Actinidia chinensis	28.57	68.9	86.89	206	forward
CNT30434672	Oryza rufipogon	Aegilops tauschii	40.08	65.98	95.85	289	forward
CNT30252948	Oryza rufipogon	Avena sativa	38.7	53.86	95.7	279	forward
CNT30664872	Oryza rufipogon	Triticum dicoccoides	38.42	58.94	95.31	277	forward
CNT30135596	Oryza rufipogon	Lolium perenne	38.7	74.8	93.19	279	forward
CNT3015042	Oryza rufipogon	Zea mays	38.83	47.3	96.07	280	forward
CNT30229571	Oryza rufipogon	Ananas comosus	28.43	49.76	93.66	205	forward
CNT30148852	Oryza rufipogon	Brachypodium distachyon	34.26	55.63	94.74	247	forward
CNT30581397	Oryza rufipogon	Echinochloa crusgalli	36.75	45.14	97.36	265	forward

Expression of CNT30101875

Peptides detected in this lncRNA

>peptide 1 (52 aa)
LSSPNRTNQNKISSQNGQTQIAHQQEDRSTTLALKHVSIQIPVANIICFTIS*

>peptide 2 (46 aa)
MAADDDYSGGSTHERERKASGIGEEVVVIGVGFGEERGGGFKRGRED

Sequence

>CNT30101875
CCTAAGTTCACCAAATCGCACTAACCAAAACAAAATTTCATCCCAAAACGGACAAACACAAATTGCACATCAACAAGAGGACAGATCCACAACATTGGCT
CTGAAACATGTTTCAATTCAAATCCCAGTTGCAAACATCATTTGCTTCACAATTTCATGATTCAGGTAAACACTAGAAAAACTAAACAGCGAACTGAACA
AGGTGGATTCCACGGCTTTCCATCAAACTTTTTTTCTTGACCGCAAGACTTGTGGGCACGGCCAGACGACATGGGAGAGATGGCGGAGGGAGGCAAGATC
GATCAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGA
TCTTGAGCACGCCGCGGGTCTCCTCGTAGATCAGCCCGGAGATGCGCTTCACGCCGCCCCTCCTTGCCAGCCTCCGGATCGCCGGCTTGGTGATCCCCTG
GATGTTGTCGCGGAGCACCTTCCGGTGACGCTTGGCGCCGCCCTTGCCGAGCCCCTTGCCTCCCTTGCCGCGCCCCGACATGGCCGCCGACGACGACTAT
TCCGGTGGCTCGACGCACGAGAGAGAGAGAAAAGCGAGTGGAATTGGAGAAGAGGTGGTGGTGATTGGAGTGGGATTTGGGGAAGAAAGGGGAGGGGGTT
TTAAAAGGGGACGAGAGGATG