Detailed information on CNT30101834


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AT41|NNJA4_ORYSJ, E-value = 5e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693369Oryza rufipogonOryza sativa74.6310099.67300forward
CNT30576403Oryza rufipogonOryza barthii80.610099.38324forward

Expression of CNT30101834

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MAQQQHLMLAMTKDFLVAIFQSWIHFLRNLAASFLENQLQHHHWIVFCQILY*

>peptide 2 (35 aa)
LSFLAIVSLTDSCSFNFVFCSKRGHSLRGTAHCNS*

Sequence

>CNT30101834
CTTGAGTTTTCTTGCCATCGTCAGCTTGACTGATTCCTGCTCGTTCAACTTTGTCTTTTGCAGTAAAAGAGGACATAGCCTGAGAGGTACTGCCCATTGT
AACAGCTAGTTCATTGTTTGTAGGTGGCCTCAACTGCACTGTACATACTGGAGTGAAATTTGATGCATTGGTAATACTGGGAGGAGCTGAAACCTGAGAC
GGGACTTGATATGGCACAGCAACAACATTTGATGCTTGCAATGACAAAGGATTTCCTTGTGGCAATTTTCCAGAGCTGGATTCACTTCCTGAGAAACTTG
GCTGCCTCTTTCCTTGAAAACCAACTGCAGCATCATCACTGGATCGTTTTCTGTCAGATCCTCTATTGACAACAGATCCCTTAGCACTGTCTTCACGCTG
TG