Detailed information on CNT30101758


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004888, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693421Oryza rufipogonOryza sativa92.8180.7599.81516forward
CNT30553781Oryza rufipogonOryza glaberrima94.7889.6397.53527forward
CNT30104997Oryza rufipogonOryza longistaminata69.0656.7292.45384forward
CNT30576428Oryza rufipogonOryza barthii93.3593.3597.5519forward

Expression of CNT30101758

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MSYCFNTLSLLSPTHVKAYVMQIILLNLLFFRPTELSSSRRYFLCLNGDWSMLETNKFFYL

>peptide 2 (77 aa)
MYMNLAGIHGRSFRRRRIGRPAGGASHGRWPEVTTAVPNPFCFHVLLFQHSELTVTYSREGICDANYTIKPIVFQAN*

>peptide 3 (82 aa)
QSRCPPPPPPPPPRRPENPPPPDPADRHPHIPPPPTRIHMQAHHIPWTLKNLHEAMFRLRETTTMINLQVDYNDSSKSSTCI*

>peptide 4 (49 aa)
RSLAAPPPPPPPPHGGLRIPHRRILRIDILTSLLRRREFICKHIISPGL*

Sequence

>CNT30101758
CGCAGTCTCGCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCACGGCGGCCTGAGAATCCCCCACCGCCGGATCCTGCGGATCGACATCCTCACATCCCTCC
TCCGCCGACGAGAATTCATATGCAAGCACATCATATCCCCTGGACTCTGAAGAATCTGCATGAAGCCATGTTCAGACTGAGAGAGACCACAACAATGATC
AATCTGCAAGTAGACTACAACGACAGTAGTAAAAGCAGCACATGTATATGAATCTGGCCGGAATTCATGGCCGGTCATTTCGACGTCGACGGATCGGCCG
GCCGGCCGGCGGTGCATCACATGGACGGTGGCCGGAGGTAACGACGGCAGTGCCTAATCCCTTTTGCTTCCATGTCTTATTGTTTCAACACTCTGAGCTT
ACTGTCACCTACTCACGTGAAGGCATATGTGATGCAAATTATACTATTAAACCTATTGTTTTTCAGGCCAACTGAATTGAGTAGTAGTAGGAGATATTTC
CTGTGCTTGAACGGTGATTGGTCCATGCTTGAAACGAATAAGTTCTTTTATTTAAT