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Detailed information on CNT30101734


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005134, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678474Oryza rufipogonSetaria viridis22.7242.6788.99227forward
CNT30522059Oryza rufipogonSetaria italica18.9238.8984.66189forward
CNT30189491Oryza rufipogonSecale cereale9.9135.7482.8399forward
CNT30224680Oryza rufipogonHordeum vulgare34.3350.8180.76343forward
CNT30445586Oryza rufipogonSaccharum spontaneum25.3327.4188.14253forward
CNT3067447Oryza rufipogonLeersia perrieri43.1476.2891.65431forward
CNT30351991Oryza rufipogonEragrostis tef25.3339.1688.14253forward
CNT30575480Oryza rufipogonOryza barthii30.0355.3591.33300forward

Expression of CNT30101734

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLGSSQLCHYKMMREIHSRKESSEQEIGSM

>peptide 2 (35 aa)
MAPFGEGLAISMFEDVQEEVYPGQSIKCTPWNLTT*

>peptide 3 (47 aa)
MTQLSPLKYTRCGKAHPLSKVKSLESLRRRSSDCAFPSGPACMSKSL*

>peptide 4 (63 aa)
MLSDQIPLCVIHAVVEVRNRDLHSPIFLIVEFHMPVDSDRAHVRSTLDKRLTGPFARAINGRL*

Sequence

>CNT30101734
TTCAGAGCAGAAGTAGTATGAAGCTTCTTGACACATGCATGCCAAAACATGGCTCCGTTTGGAGAAGGCTTAGCAATTAGCATGTTTGAGGATGTGCAAG
AGGAGGTTTATCCAGGACAATCTATAAAGTGCACACCATGGAACCTGACAACTTGAAGCTCACCGAATTTCTTGGTTTCACTCATCATGCATAAGCCAGC
AAAGTAGCCAACACAATCGAAAATACCAAAACCGAGAGTGTCAATGGTTGTTTTGTCAGAGGACTTGCATTAGGCAACCATGGATATGCATCCGGAGGTG
GCATGACACAATTATCACCATTGAAGTACACGCGGTGTGGGAAGGCCCATCCCTTGTCAAAGGTGAAGTCCTTGGAATCCTTACGCAGAAGAAGTTCTGA
CTGTGCATTTCCAAGTGGACCAGCTTGCATGAGCAAATCGTTATAGAACTTAACTCCCCAGAACATCGCAGTATCATCTAAAATAGAAGGAATAAACTTC
ATCAGAGAAAGAGAGAGAGAGAGAGAGAGATAAAGGAACGTATTACAAGTGCACTCCAATTTTCTTAAATAAAGGAGAACAGTTTGTAAATTGACTTACT
TATCTTGCTTCCATATGGAGTAAGTGGCTTGTAGTTGAAGCTAAACAGCTGGGTGATATTATTGAAGTTAGGATGTTGAGCGACCAAATTCCACTGTGTG
TAATTCATGCGGTAGTTGAAGTTCGTAATCGTGATCTTCACTCTCCAATATTCCTTATAGTTGAGTTTCACATGCCAGTGGATTCTGATCGGGCACATGT
GAGAAGTACATTGGACAAGAGGCTGACCGGTCCATTTGCCAGGGCCATCAATGGCAGATTGTAAATAAGCTTCCAGGACTTGTCCCATTGTTTTGGCAGC
CACAAGAGCATGTTGGGCAGTTCACAATTGTGTCATTATAAAATGATGAGAGAGATACACAGCAGGAAGGAGTCTTCTGAGCAAGAAATTGGGAGTATG