CANTATAdb - search

Detailed information on CNT30101731

BLAST search results

BLAST vs Swiss-Prot:
sp|Q3E6T0|PT525_ARATH, E-value = 2e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30521026	Oryza rufipogon	Setaria italica	45.11	89.2	92.11	355	forward
CNT30374269	Oryza rufipogon	Arabidopsis thaliana	13.34	22.44	84.76	105	forward
CNT30553864	Oryza rufipogon	Oryza glaberrima	82.08	32.36	98.92	646	forward
CNT30596265	Oryza rufipogon	Oryza meridionalis	19.06	60	99.33	150	forward
CNT30149311	Oryza rufipogon	Brachypodium distachyon	19.82	73.24	94.23	156	forward

Expression of CNT30101731

Peptides detected in this lncRNA

>peptide 1 (38 aa)
VVVVCHPQEGDPVAEQVDRRDRVPDHGPREGDQQHGAT*

>peptide 2 (36 aa)
MPPAPPPPAMAGASPAMDLDRRGGGRRWRRRRRRRI*

>peptide 3 (85 aa)
MPLEVSRIWMSTSRVASNATAASCSATPRTSKRASPYAAMATPNEMESMLSMEDDLKVSFLKSTPMEYTATGMSALSIWMKDTER*

Sequence

>CNT30101731
ACGTGGTTGTAGTATGCCACCCCCAAGAAGGCGATCCCGTAGCCGAACAGGTTGATCGGCGTGACCGTGTCCCGGATCACGGACCACGAGAAGGCGATCA
GCAGCACGGCGCGACGTAGTACAGAGAGGTGATTGGGTTGAGCGAGATGCCCTTGGAGGTGAGCAGGATCTGGATGAGCACGAGCCGCGTGGCCTCGAAC
GCCACCGCGGCGAGCTGCAGCGCGACACCCCGAACATCGAAGCGCGCCTCGCCGTATGCGGCGATGGCGACGCCGAACGAGATGGAGAGCATGTTGAGCA
TGGAGGACGACCTGAAGGTCTCCTTCTTGAAGAGCACCCCGATGGAGTACACGGCGACGGGCATGAGCGCCTTGAGCATCTGGATGAAGGACACGGAGAG
GTAGATGTAGGCCGAGTTGGAGAACCACAGCGACATGGCGTAGAGCGCGCCGATGGGAACAACGGAGGAGGTGTAGAGCTGCGGGGCGGACGAGGGCGAC
GGCGAGGGAGGAGCAGAAGGCCATGTGGACCATGGTGAGGGAGATCGGGAAGGGCCAGTTGTACATCTTGGGGTCGAGGATGTACTTGTTGTAGACGATG
ACGGCGAAGGAGAGGAAGATCCAGACGCCGACGTAGCAGTAGGAGAGGAGCACCTTGCGGAGCACCGACTCCGACATGCCGCCGGCGCCCCCGCCGCCGG
CCATGGCTGGCGCCTCCCCGGCGATGGATCTGGATCGGCGAGGGGGTGGGAGGAGGTGGAGGAGGAGGAGGCGGAGGCGGATCTGAT