Detailed information on CNT30101726


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004863, E-value = 6e-176

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553919Oryza rufipogonOryza glaberrima94.9290.9499.45542forward
CNT30241489Oryza rufipogonAvena sativa29.625.7280.47169reverse complement
CNT3011843Oryza rufipogonZea mays27.8520.3685.53159reverse complement
CNT30689516Oryza rufipogonTriticum urartu27.859.3282.39159reverse complement
CNT30345639Oryza rufipogonEragrostis tef33.4526.2785.86191reverse complement
CNT30370198Oryza rufipogonOryza glumipatula76.1889.8899.08435forward
CNT30434187Oryza rufipogonPapaver somniferum21.8919.9482.4125reverse complement
CNT30643829Oryza rufipogonCannabis sativa24.5215.6681.43140reverse complement
CNT30319727Oryza rufipogonAsparagus officinalis22.4214.8581.25128reverse complement
CNT30576293Oryza rufipogonOryza barthii91.4210099.43522forward
CNT30496981Oryza rufipogonDigitaria exilis34.3332.1887.24196reverse complement

Expression of CNT30101726

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MNFQKIKTAIQLCSHHSVKNYSSLSSKHKQNLVSSHYCTKPSVIGSV*

>peptide 2 (80 aa)
MEPILNPVLRIPRWMSSQHHFSSCLQTYQWRPAAHLCLPPLSWCSNTRRGRKQTVLQPPQSSWSWVPGCRIPPSLVCTGCC

Sequence

>CNT30101726
CTGCTATATGTCGTTGGGCTACTCAATAAAAAGGTGATTGATACATCATACAAGAGGGGGAATCTAACGTGATAATAGTCCCATAACATTGCTACACTTT
TGTTGTCTTTTGCATACCCACACACAAATAGAAACCTTCAAGTTACACAGGTCATCATACTGTTATATGAACTTTCAGAAAATTAAAACTGCAATCCAAC
TCTGCAGCCATCATTCAGTCAAAAATTATTCCAGCCTATCATCAAAGCATAAGCAAAACCTAGTATCGAGCCATTATTGTACAAAACCAAGTGTCATCGG
TTCAGTATAGAGGGCTAGAGGCGGACATGGAGCCAATTCTAAACCCTGTTCTTAGGATCCCGCGGTGGATGAGTTCCCAGCATCATTTTTCTTCATGTCT
TCAAACTTATCAATGGCGACCTGCAGCTCATCTGTGCCTCCCACCGCTCTCATGGTGTAGTAATACACGCCGAGGACGAAAGCAGACAGTCCTCCAGCCA
CCACAAAGTTCTTGGTCTTGGGTGCCAGGCTGCCGAATCCCGCCATCTTTAGTTTGCACCGGTTGTTGCAG