Detailed information on CNT30101718


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L4S3|HIRL1_ORYSJ, E-value = 5e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693652Oryza rufipogonOryza sativa43.2372.17100249forward
CNT30521034Oryza rufipogonSetaria italica41.4967.5182.01239forward
CNT30530635Oryza rufipogonEucalyptus grandis23.2619.3984.33134forward
CNT30401917Oryza rufipogonBeta vulgaris41.1557.1178.06237forward
CNT30194604Oryza rufipogonPisum sativum40.863.1778.72235forward
CNT30441068Oryza rufipogonAegilops tauschii19.4422.6787.5112forward
CNT30471513Oryza rufipogonSaccharum spontaneum39.2454.8591.59226forward
CNT30219137Oryza rufipogonKalanchoe fedtschenkoi38.8938.6280.36224forward
CNT30370230Oryza rufipogonOryza glumipatula86.1198.4199.6496forward
CNT30105268Oryza rufipogonOryza longistaminata52.9566.5987.21305forward
CNT30551158Oryza rufipogonOryza brachyantha14.9336.1394.1986forward

Expression of CNT30101718

Peptides detected in this lncRNA

>peptide 1 (40 aa)
YNTENRITCTFTCLTLKFHKVFTRHSSTHTYTIGYHSQLK*

>peptide 2 (36 aa)
MKKLQDISNHTGQIKRNSSLAIPQLVSHMDANGRWW*

>peptide 3 (47 aa)
MSRTAPISFMVSKYWVMSTMSITSLAVVPGTFTENPSTLSLNPSTIA*

>peptide 4 (53 aa)
MLMGGGGSLALKKAVADLRGDVADGADLLHGVEVLGDEHHVHHVLGRGARHVH*

Sequence

>CNT30101718
ATACAATACAGAGAACCGGATTACATGCACATTTACATGTTTGACGCTGAAATTTCACAAAGTTTTCACAAGGCATAGTTCCACACATACATACACGATA
GGATATCATTCACAACTAAAATGAAAATGTTGCCCGCGCGCGCACACACGTCGGTCGGACAGCTAGCATGAAGAAATTACAAGACATATCTAATCACACA
GGACAAATCAAGAGAAACAGCAGCTTAGCAATCCCACAGCTGGTGTCCCACATGGATGCTAATGGGAGGTGGTGGTAGCCTGGCCCTGAAGAAGGCCGTC
GCGGATCTGCGTGGCGATGTCGCGGACGGCGCCGATCTCCTTCATGGTGTCGAAGTACTGGGTGATGAGCACCATGTCCATCACGTCCTTGGCCGTGGTG
CCCGGCACGTTCACTGAGAACCCCAGCACGCTGTCCCTCAACCCATCCACGATCGCCTGACGCTGCCTCGCGATACCCAGCCCCGACAGGTACTTTGCTT
CCGCTTCTCCCTCCGCCCTCTTTATCTGCACGATCTTCTCTGCCTCTGCCTTCTCGTTTGCAGCCACCCTCAGCCT