CANTATAdb - search

Detailed information on CNT30101702

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693736	Oryza rufipogon	Oryza sativa	100	31.52	100	572	forward
CNT30111613	Oryza rufipogon	Oryza longistaminata	18.01	35.64	99.03	103	forward

Expression of CNT30101702

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSLVLQLIVVNHYSSSNGVSSVVQTTSVTVEFQLESTPLI*

>peptide 2 (40 aa)
MQLITLIKMGAMLSCVFEGKKEEAVSTETDPYCRGASILK*

Sequence

>CNT30101702
CATACAAGTGCCCCTCTGCAGCTGTAAAATTCAGTCCTGAATCTTTTCACTTAATTTATATCTGTAGTGTTAGCAGAACAAGATGATCATTAGCCATTGA
GATGATGTAGCAGGCAGTCATATGAGATTTTTTTGGACTTCAATGTTAGCATGGCCCATTTCCTGATTAATTGGACTGGTTGATCTGCAAAGGTTGGTCT
TGTTAGCTGAAGTGACACCATATGCAGCTTATTACCTTGATAAAAATGGGAGCAATGCTCTCATGCGTTTTTGAGGGAAAAAAAGAGGAAGCAGTGTCAA
CGGAAACTGATCCTTACTGCAGAGGTGCATCAATACTGAAATGAGTCTTGTGCTACAGTTAATTGTAGTAAATCACTACAGCAGTAGCAATGGTGTTTCC
AGTGTAGTGCAGACAACTTCTGTTACTGTAGAATTTCAACTGGAAAGTACACCTCTGATCTGATGTTCAGAATTGATCCTAAAACATGACACAAAATTGA
TGCCGACTCAAGTGAACTTGTCAAGAGTCTGCGTGACAAGTTGCTTCTGTATTTAAAGTTGGTGATGATAAT