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Detailed information on CNT30101696


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005134, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30149Oryza rufipogonZea mays15.2532.1883.05177forward
CNT30105840Oryza rufipogonOryza longistaminata45.2269.0898.86525forward
CNT30604101Oryza rufipogonOryza punctata26.2798.3996.72305forward

Expression of CNT30101696

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MAPFGEGLAISMFEDVQEEVYPGQSIKCTPWNLTT*

>peptide 2 (54 aa)
MELVSNFAEKLGLNKKRSKSFGFINSLYTASRTCPIVLAATRACWAVHNCVIIK*

>peptide 3 (44 aa)
YTMPWAAFAPWLISEEFRIQSRSSMKLLDTCMPKHGSVWRRLSN*

>peptide 4 (56 aa)
MLGSSQLCHYKMMREIHSRKESSEQEIGSMCRSHSMSLQTDFIFVKKQKTKMNFMV*

Sequence

>CNT30101696
TTTATACCATGCCATGGGCGGCATTTGCTCCCTGGTTGATCTCTGAAGAGTTCAGAATTCAGAGCAGAAGTAGTATGAAGCTTCTTGACACATGCATGCC
AAAACATGGCTCCGTTTGGAGAAGGCTTAGCAATTAGCATGTTTGAGGATGTGCAAGAGGAGGTTTATCCAGGACAATCTATAAAGTGCACACCATGGAA
CCTGACAACTTGAAGCTCACCGAATTTCTTGGTTTCACTCATCATGCATAAGCCAGCAAAGTAGCCAACACAATCGAAAATACCAAAACCGAGAGTGTCA
ATGGTTGTTTTGTCAGAGGACTTGCATTAGGCAACCATGGATATGCATCCGGAGGTGGCATGACACAATTATCACCATTGAAGTACACGCGGTGTGGGAA
GGCCCATCCCTTGTCAAAGTGGATTCTGATCGGGCACATGTGAGAAGTACATTGGACAAGAGGCTGACCGGTCCATTTGCCAGGGCCATCAATGGCAGAT
TGTAAATAAGGTGAATTCTCACTGTGGAAATGCATGGAACTTGTTAGCAATTTTGCAGAAAAGTTGGGCCTCAACAAGAAGCGAAGTAAGAGTTTTGGTT
TTATTAACTCACTTTACACAGCTTCCAGGACTTGTCCCATTGTTTTGGCAGCCACAAGAGCATGTTGGGCAGTTCACAATTGTGTCATTATAAAATGATG
AGAGAGATACACAGCAGGAAGGAGTCTTCTGAGCAAGAAATTGGGAGTATGTGCAGGTCACATTCCATGTCACTGCAAACAGATTTTATTTTTGTTAAGA
AACAAAAAACAAAAATGAACTTTATGGTATAAGATTTTGACAAATTTAACTTCTATATGGAGCCACTATGATGCATGTCTGCATTTGACGAATATTATTT
GCTAGAGAATAATATTAACTGAATTAGCTGTATTCTATTAGGCCAACATGCCAAGTAATATAACCTATTATCAACTATTATTCACAGTTGGACTCATCTC
ACTTTGAGAACAATCTCTTTCCCTTCAACAGATTACATCTTCTTACTAACCCTACACATAAGGTAACCTAGTTCAACCATGCAATTGTTGTTTAGGCTGC
AAATGCATTTCCTCAAAGAATGAAAGCAATTGGTATTAAACATTAAAGAACAACAGATGAG