Detailed information on CNT30101683


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30116763Oryza rufipogonOryza nivara17.1330.7710068reverse complement
CNT30603487Oryza rufipogonOryza punctata21.6629.3595.3586forward

Expression of CNT30101683

Peptides detected in this lncRNA

>peptide 1 (63 aa)
AVIWYPGAPTSPSGRPPPCLPCCRPGKKKGRRRKGKKEAEEIEVKMEMWGLITRRPWRPRYLL*

>peptide 2 (58 aa)
RHLVPWGAHLPLWSTSPMPALLQTWEEEGKEKKGKEGSGGNRGEDGNVGFDYPPPMEA*

>peptide 3 (43 aa)
PSFGTLGRPPPPLVDLPHACPAADLGRRREGEERERRKRRKSR*

Sequence

>CNT30101683
GCCGTCATTTGGTACCCTGGGGCGCCCACCTCCCCCTCTGGTCGACCTCCCCCATGCCTGCCCTGCTGCAGACCTGGGAAGAAGAAGGGAAGGAGAAGAA
AGGGAAAGAAGGAAGCGGAGGAAATCGAGGTGAAGATGGAAATGTGGGGTTTGATTACCCGCCGCCCATGGAGGCCTAGGTACTTGCTGTGACGTATTTG
CATGAAGGGATGGGATTAGCTACATTGTCGCACGACATGATCTCACTTAGTCATGATTATTGTAATATGTTGATAAGATTACTTAGTCATTGATTAGCTC
CTTTTTCAAGTCTATCCCTATATGTCAGTCAATTGTTGTATCATTACCTTAATCTATATGTTGATGCTTCCAAAATGTTTTCTTGTCTAAGGTAGTT