Detailed information on CNT30101676


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693543Oryza rufipogonOryza sativa82.5598.3199.43350forward
CNT30672419Oryza rufipogonSetaria viridis35.3838.5691.33150forward
CNT30520974Oryza rufipogonSetaria italica35.3818.2391.33150forward
CNT30178523Oryza rufipogonSecale cereale31.623.8985.07134forward
CNT30553623Oryza rufipogonOryza glaberrima17.4529.4810074forward
CNT30435258Oryza rufipogonAegilops tauschii36.7954.9386.54156forward
CNT30657122Oryza rufipogonTriticum dicoccoides36.3229.4586.36154forward
CNT30130810Oryza rufipogonLolium perenne36.3229.7384.42154forward
CNT3010486Oryza rufipogonZea mays20.999.7889.8989forward
CNT30679781Oryza rufipogonTriticum urartu36.3222.9584.42154forward
CNT30720193Oryza rufipogonTriticum spelta36.7928.5786.54156forward
CNT30338878Oryza rufipogonEragrostis tef37.7420.5187.5160forward
CNT30582819Oryza rufipogonEchinochloa crusgalli31.1315.8190.15132forward
CNT30604128Oryza rufipogonOryza punctata39.1557.2492.77166forward

Expression of CNT30101676

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MQHRIGSFTTYIAIGIVQLYQHHKQGELIHGDPAMGD*

>peptide 2 (33 aa)
MAIRPWGTSSTVQRICMDGSDQEEGEAETRNLI*

Sequence

>CNT30101676
ATGCAGCATCGAATTGGATCCTTTACAACTTATATAGCCATAGGAATAGTACAATTATATCAACATCATAAACAGGGGGAATTAATCCATGGCGATCCGG
CCATGGGGGACTAGCAGTACGGTACAGAGGATTTGCATGGATGGATCGGATCAAGAAGAAGGTGAGGCAGAGACGAGGAATTTAATTTAGATCTTGCCGC
GTGGGCCGGGCGTCGGCGGCAGCTGCGGGCCCTTCTTGATCGGAAGCAGGTCCGGCGACGCCGACGCGCTGACGTAGGCCACCAGCGATCCGCCGCCGAG
CAGCAGGAACTTGAGCAGGAGCCCCCTCTTGGTGAAGGGCTGGACGGCGACGAGGGACGCCATTGCTGCGGTGAATTCGCGGGAGGACGCAAAGCTGAGT
AGATAGATGGATAGATAGCCGGTG