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Detailed information on CNT30101639


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693936Oryza rufipogonOryza sativa57.77102.4597.01502forward
CNT30596215Oryza rufipogonOryza meridionalis23.3640.298.52203forward

Expression of CNT30101639

Peptides detected in this lncRNA

>peptide 1 (34 aa)
HQTNIIHRILPKQFNQEQIKPFSDTRIDSLLQTL*

>peptide 2 (32 aa)
MRRRRTSRGRRRRRSGNGGGGARSTSSEYGER*

>peptide 3 (59 aa)
MPKYYNHQFITSQTSTHVLSKNYIKSDCSLPPLLARSTGDEHISHKTRQDYNTHCLLMV*

>peptide 4 (56 aa)
MKQTIIKHNKHHQTTTEASTTSCNAAATMPLMPMAMACELSMVAQNWKASAMAMSS*

Sequence

>CNT30101639
TCACCAAACCAACATCATTCACAGGATTCTTCCCAAACAATTCAATCAGGAACAAATAAAACCATTCAGTGACACAAGGATAGATTCATTGCTGCAAACA
TTATAGCATAGGTTCAATGCCAAAATATTACAATCATCAGTTCATCACATCACAAACCAGCACACATGTGCTCTCCAAGAATTACATCAAATCGGATTGT
TCTCTTCCACCCTTATTAGCAAGGAGCACTGGAGATGAACACATCTCACATAAGACTAGACAAGATTACAACACACATTGCTTATTAATGGTCTAGATTA
ATGAAAACAACATGAAGCAAACCATAATTAAACATAATAAGCATCATCAGACAACCACAGAGGCTAGTACTACTAGTTGTAATGCAGCTGCAACCATGCC
ATTGATGCCAATGGCCATGGCGTGCGAGCTCTCCATGGTGGCTCAGAACTGGAAGGCGTCGGCCATGGCGATGAGTTCATGAGAAGACGTAGAACCAGTA
GAGGAAGGCGACGGAGAAGGAGTGGGAACGGCGGCGGCGGAGCACGTTCAACTTCATCGGAGTACGGCGAACGTTAGAGGTAAGGATAGGTAAACATTCC
TCAGATCGGATCTACGCCACCAACCTCAACCTCGACCAAGAACAAGAACAGCAACGACTCCGCGAGGAGAGGGAGTGGAAACTAAAATTCGACCAACCCG
AGGGGCTTCCTCGCAAGAATGCAAGGAGTAGACTCGAAAGAAAAAGAAACTAGGAGGACCTGAATGTAATAAAAAGATGGGAACCAAAGGACTTATCTGC
GAAACAGAGGGGACTCCGGGGGCTCTAATGCATAAGGGGCGCAATTAGACGGATGGGGAAGGTTTAGAA