Detailed information on CNT30101628


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596325Oryza rufipogonOryza meridionalis22.5911.1998.6775reverse complement
CNT30108499Oryza rufipogonOryza longistaminata53.3125.598.31177reverse complement
CNT30576574Oryza rufipogonOryza barthii69.5824.9296.54231forward
CNT30117134Oryza rufipogonOryza nivara25.925.6786.0586reverse complement

Expression of CNT30101628

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MLTGERRCGGRRRTPGATSARRMGIGASGGRGDGSRGRRARRRDGLGRRRSCTRCRLPMGHM

>peptide 2 (54 aa)
MRWKEEDAGRHLCSQDGDRRKRRARRRESRAEGEETGRIGEAEVVHAVSPAYGSY

Sequence

>CNT30101628
TTACATATGCTAAAAACGGAAATCAAAATTAACAACTTGAAAGTAGGTGGAGCTGGGCAGAGGCAGATCTAACCCTGTTTCCGTTGAACCCCCAAACTTT
TTGAGGGATAATGCAGAATACCTGATGAGGTGTGGGTAGGGAAGGATGCTCACCGGCGAGCGACGATGCGGTGGAAGGAGGAGGACGCCGGGCGCCACCT
CTGCTCGCAGGATGGGGATCGGCGCAAGCGGCGGGCGAGGAGACGGGAGTCGAGGGCGGAGGGCGAGGAGACGGGACGGATTGGGGAGGCGGAGGTCGTG
CACGCGGTGTCGCCTGCCTATGGGTCATATGC