Detailed information on CNT30101614


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XBQ9|RGA2_SOLBU, E-value = 4e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521356Oryza rufipogonSetaria italica29.1747.4285.96285forward
CNT30553900Oryza rufipogonOryza glaberrima71.249995.55696forward
CNT30104896Oryza rufipogonOryza longistaminata52.267.4696.67510forward
CNT30576379Oryza rufipogonOryza barthii30.7190.6395.67300forward

Expression of CNT30101614

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MEDRAKRKTSLQYGRQMIVTQSQCCKRQAFQLLHNFLAYNF*

>peptide 2 (45 aa)
MLVVTDENPLATDSMVSLVSFISSKCSETHSHTRNWKYSFTLGSL*

>peptide 3 (57 aa)
MGRTEMLALLELFGVSNIFTMISLSSSLPNTLEPSISELVFGLSLISSLSMALLISGP

>peptide 4 (81 aa)
MKSGFYCDKRMTGTWHFLMSCCCLEGHPVLSIHQLRPTAQGHAWRHASHILLCYVGRRICLIIHQNSYSQVPPLFSFLETE*

Sequence

>CNT30101614
CTTAAATCCAAGAAAAGCTTCAAATGAAGTCCGGCTTCTATTGTGACAAGAGAATGACAGGTACCTGGCACTTCTTGATGAGCTGTTGCTGTTTGGAGGG
ACATCCAGTCTTAAGCATTCATCAATTGAGACCGACTGCGCAAGGTCATGCATGGCGTCATGCATCACATATCCTCCTTTGTTATGTTGGAAGAAGGATC
TGCTTAATAATTCATCAAAATAGCTACTCCCAAGTTCCTCCATTGTTCTCCTTCCTGGAGACTGAATGAACCCAAGGGCCATCCATATTTGCACCAAGCT
TTCCTTTCCAAACACATAATCTTTATGGAAGACCGAGCAAAACGCAAAACATCGCTTCAATATGGCAGGCAAATGATTGTAACTCAGTCTCAGTGCTGCA
AGCGGCAGGCCTTTCAACTTCTTCACAATTTCCTTGCCTATAATTTCTAAATGTGGGTGCAAACTTAAATCGCCATCAGCAAATGCGTAGCTTCTGAACA
AGTTCCAGCAATCATTTTCAGATAACTGCTTTAGAAAGGTCCTCATTCCAAACGTCATCAAGTACTAGAAGAAACCTCTTACCTTCCAGCTTTTTTGAGA
GATTTTCTTGAAGCAAGTTCATGTTGGTCGTGACCGATGAGAATCCACTGGCAACTGATTCAATGGTTTCCTTGGTAAGCTTCATTTCGTCAAAATGTTC
AGAAACACACAGCCACACCCGTAACTGGAAGTACTCCTTTACTCTTGGATCATTGTAGACAAGCTGTGTTAGAGTTGTCTTCCCTAGTCCCCCCATACCC
ACTATGGGAAGAACAGAAATGTTGGCATTGTTGGAGTTGTTCGGGGTCAGCAACATCTTCACAATGATCTCTTTATCTTCTTCTCTCCCAAACACACTTG
AGCCATCAATTAGTGAACTCGTCTTCGGCCTCTCTTTGATCTCTTCTCTGTCCATGGCACTGCTCATATCAGGGCCA