Detailed information on CNT30101607


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693746Oryza rufipogonOryza sativa31.3438.5100251forward
CNT30520681Oryza rufipogonSetaria italica9.6120.6485.7177forward
CNT30553785Oryza rufipogonOryza glaberrima45.44100.2899.18364forward
CNT3067432Oryza rufipogonLeersia perrieri33.3337.3988.01267forward
CNT30596221Oryza rufipogonOryza meridionalis61.9297.2598.59496forward
CNT30109966Oryza rufipogonOryza longistaminata63.9296.9798.63512forward
CNT30576506Oryza rufipogonOryza barthii62.55100.299.6501forward

Expression of CNT30101607

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MILKNSKAKHFFKHPSSTSYKNNQYRQTKRSMLKQKNK*

>peptide 2 (38 aa)
MTHILFKEQCTGILFLCNPTFVFLLSELSLFLLLSSLC*

>peptide 3 (94 aa)
HRPSHQTEDKLKMSSSCISSFCNKTIFMRILVVIALLLLALGVLPFAPHSHSETSNTSRKSRYILISGCNNYCSVACCYCNIHRFPPVCEKCCK*

Sequence

>CNT30101607
CACCGTCCAAGTCACCAAACTGAAGATAAGCTGAAGATGTCGAGTAGCTGTATTAGCAGCTTTTGTAACAAGACCATCTTCATGAGGATACTTGTCGTTA
TAGCTTTGCTTCTACTGGCCCTTGGAGTTCTTCCCTTTGCACCACATTCACACAGTGAAACTTCGAACACCAGTCGAAAATCTCGGTACATTCTTATAAG
TGGTTGCAACAACTACTGCAGTGTGGCATGCTGCTATTGCAACATTCACAGGTTCCCTCCAGTTTGTGAGAAGTGCTGCAAATAATTCATTGAAGTCCAT
GACACATATCTTGTTTAAGGAACAATGCACAGGCATTCTTTTTCTGTGCAATCCCACCTTCGTTTTCTTATTGTCTGAATTGTCTTTGTTCCTGCTGTTA
TCTTCGCTATGTTGAAGCAACAGATATAAACCTGACAATACCATCTTTTTTTATCAGTGACTTATTTCAAACTTGGTATAAGATACAATACCAGCGCAGC
TATAAAAGCAAGAAACACAACATGTAAATAGTTATCTGTAATACACATCGTGCCCAAATGATCTTAAAGAACAGTAAGGCAAAACATTTCTTCAAGCATC
CTAGCAGTACAAGTTACAAAAACAACCAGTATAGACAAACTAAAAGGTCTATGCTAAAGCAAAAAAACAAATAACACCTAAAACTGAAAATATATATTTC
CAAATATACTAAGGAGAAACCTATTCTCTTTCTGTATTGTTGGTAAAGCGCCAAATTAGGCCTCCGATAATATTGTTTATGGAGTGAGAAGCCATTGGAA
C