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Detailed information on CNT30101586


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596048Oryza rufipogonOryza meridionalis81.9997.1498.151188forward
CNT30576199Oryza rufipogonOryza barthii47.237.7799.42684forward

Expression of CNT30101586

Peptides detected in this lncRNA

>peptide 1 (77 aa)
QIVKFPTPHSLSSPSPSPSPARHRRTASTSLSSNPSVPHTPSPPSRRASATTLSSSTSLFSPLTRPAQACDGQIRCP*

>peptide 2 (53 aa)
MRSVHAPWTHSTTTLHGCFIPWSSSVATGIIYLLWLASSSTSLAKLFSQSHGK*

>peptide 3 (53 aa)
MRRSGGGKRERAARSSQDPLFSSPAVVAAEACSIPSPPGPEGGGWDAVACDTR*

>peptide 4 (62 aa)
MEALLISVNTPGLCTTTVHTANKLQHTQNKRKKKQRARSRPYNPKTRSPPICRRKKLLDHLL*

>peptide 5 (35 aa)
MTYDAICQHFSSCMASWLPKDVLICRKYCSDSSQL*

Sequence

>CNT30101586
CAAATAGTTAAATTCCCCACCCCTCACAGCCTCTCTTCCCCTTCCCCTTCACCTTCTCCAGCGAGGCACCGGCGCACCGCCTCCACCTCCCTCTCATCCA
ATCCTTCTGTTCCTCACACCCCTTCCCCTCCCTCTCGCCGGGCAAGTGCCACTACCCTGTCGTCATCCACCTCACTCTTCTCTCCCTTGACCAGGCCAGC
GCAAGCTTGTGACGGCCAGATCCGGTGCCCTTGAGCTCGAGACGGACAGATCCGGCGCCCTTGTGCTCGGTGCCACCGGATCCAGCCCCAATGCGACGTA
GTGGAGGCGGCAAGAGGGAGAGGGCCGCCAGATCCAGTCAAGACCCGCTATTTTCTTCTCCAGCCGTCGTGGCGGCGGAAGCATGCTCGATCCCCAGCCC
CCCAGGACCTGAGGGTGGGGGTTGGGACGCCGTTGCATGTGACACTCGATGAGGAGTGTCCACGCGCCGTGGACGCATTCGACCACCACGCTTCACGGCT
GCTTCATACCATGGAGCTCCTCGGTCGCCACAGGAATCATTTACCTCTTATGGTTGGCTTCAAGCTCTACTTCGCTAGCTAAGCTATTTTCCCAATCCCA
TGGAAAATAAGGAAGCAGAGTACAGATAAAGGTCCAAGCAGAGGTTTTAACACCATGGCTGGTAGCAAATAGTGGCATGTTATTTTTGAGTGCTACAGTG
ATCTTACAATGACGGAAATATACCTGGTTCATGGGTATCAAAATTAACCGGCTACTGGTAATCATCCGAGGTGCTGTCAAATGACCTACGACGCCATTTG
TCAACATTTTTCTAGTTGCATGGCCTCTTGGTTGCCCAAGGATGTACTCATATGTAGGAAGTATTGTTCAGATTCATCTCAGTTGTAGCTGTTCCCGAGA
TTGGTATTGCTAGTTTTAGATTACATTGTTGTCAAATTGATTAATTCAACATGATGGTAAATGCATTCAGAAAACCATTCTTTTGTGTTTTCTAGATAAT
GGAAGCTTTATTGATCTCAGTCAATACTCCCGGCCTCTGCACCACGACAGTGCACACAGCCAACAAACTCCAACACACTCAAAATAAGAGAAAAAAAAAA
CAGCGTGCAAGATCAAGGCCCTACAACCCAAAGACTAGGTCGCCACCCATATGCCGGCGTAAAAAACTCCTTGACCACTTGCTCTAAATGTAGACAAGCC
GAAGTAACAAAGTCCTGCAAATTGGGTTTCTAGAGAATAACCCATGATCGGAGCTAATGTGTAATCAAGAAAATAACCTGTAAAGGAGAAGAAATAGTTT
TCCTATCGAAAACCACATCATTCATTGAGAGCCAAATTGCCTAGCAAGTTGTTGCCGCCCCTAGTAAGACTAGAGGTCTAAACTCTTTAGTATGTCGTAA
AACCCATTGCCCAAAATATGTGACACGTTCCTAGGCGAACAAATGTTTG