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Detailed information on CNT30101573

BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F9I1|CLPC1_ORYSJ, E-value = 5e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693027	Oryza rufipogon	Oryza sativa	35.42	33.33	100	300	forward
CNT30676635	Oryza rufipogon	Setaria viridis	35.54	86.49	87.71	301	forward
CNT30487971	Oryza rufipogon	Olea europaea	28.45	46.35	81.33	241	forward
CNT30287617	Oryza rufipogon	Triticum aestivum	35.06	52.2	89.23	297	forward
CNT30393350	Oryza rufipogon	Triticum turgidum	23.85	20.18	79.7	202	forward
CNT30553308	Oryza rufipogon	Oryza glaberrima	52.07	100	99.77	441	forward
CNT30441093	Oryza rufipogon	Aegilops tauschii	29.63	49.41	78.88	251	forward
CNT30254596	Oryza rufipogon	Avena sativa	34.24	21.87	83.45	290	forward
CNT30658759	Oryza rufipogon	Triticum dicoccoides	35.3	50.51	90.97	299	forward
CNT3062430	Oryza rufipogon	Arabidopsis lyrata	23.97	17.61	78.82	203	forward
CNT30717839	Oryza rufipogon	Malus domestica golden	33.06	55.12	79.64	280	forward
CNT30685460	Oryza rufipogon	Triticum urartu	21.13	37.76	81.56	179	forward
CNT3053264	Oryza rufipogon	Amborella trichopoda	15.82	21.41	82.09	134	forward
CNT30150411	Oryza rufipogon	Brachypodium distachyon	35.42	59.41	84.67	300	forward
CNT30581271	Oryza rufipogon	Echinochloa crusgalli	13.7	21.89	81.9	116	forward
CNT30498115	Oryza rufipogon	Digitaria exilis	35.18	37.58	86.58	298	forward
CNT30558331	Oryza rufipogon	Panicum hallii	35.3	36.11	86.29	299	forward

Expression of CNT30101573

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MKGEFMPSSFTIMSAPAERREKAIIPERRYYPSIRHSEQSHLP*

>peptide 2 (62 aa)
SLKNIPIFHPWLIWQQSLVKLQLTIDKPNKNHSYFRSLYINAAGWPGCRSIYLHFKVSYSHV*

>peptide 3 (45 aa)
MSFALSLSNTSLSIISAISLTSSLVSCRNTIISSNLFKNSGRKYCF

Sequence

>CNT30101573
AGTCATTAAAAAACATTCCAATTTTCCACCCTTGGTTGATCTGGCAACAGTCACTAGTAAAGTTGCAACTGACAATTGACAAACCAAACAAAAATCACTC
TTATTTCAGATCATTATATATTAATGCTGCTGGGTGGCCAGGATGCCGTAGCATTTACCTACACTTCAAAGTAAGTTACAGCCATGTGTAAAAAGTATTG
GAAGCCATCTGGTGCGAAGTAATGTACAGGTACAACAGTGCAGCGTTTATCTTACTGCTACCAAAAGAATAAATACACGTACTTGAAGGAGTAAAGCTTC
TGACATCCTTTTAAAAATAAAAGCAACTCAAGATCTAGCATACAGTTTGTTTGCTAAATGCATCTCTGTTGATTCATTTCCATAACATTCCTACTGCCTC
TGTTGGAAAAAAAGAGGAAAAGTGAAAGCACCTAAATGAAGGGAGAATTTATGCCATCTAGTTTTACCATCATGAGCGCCCCAGCTGAGAGAAGAGAAAA
GGCCATAATTCCAGAACGACGATATTATCCTTCAATTAGACACTCAGAGCAGAGTCACCTTCCTTGACCTCGCCAGCCAACATCTTCTCCGCCAAGCTGT
CCTCCAGAAGCCTCATAATAGCACGCCGCAGAGGCCTGGCACCATAGCTTGGGTTGTAACCTTCGTCGACAACTCTATCCCGGAACTTCTCTGTCACCTG
GAGGTCGATGTCCTTTGCCTTGAGCCTGTCAAACACTTCTTTGAGCATAATATCAGCAATCTCCTTAACCTCCAGCTTGGTAAGCTGCCGGAACACAATC
ATCTCGTCCAATCTGTTTAAGAACTCAGGTCGGAAGTACTGCTTCAG