CANTATAdb - search

Detailed information on CNT30101567

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30576141	Oryza rufipogon	Oryza barthii	55.38	98.76	99.06	319	forward

Expression of CNT30101567

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MTSGSGTSSLALSKSMVQLTTAPSAAGAADGAGGLAVALDGLDALVLLGEDLGEQLRRVAQRRPQLVRRRLHLHHQLNLGRHDLSLSLNL*

>peptide 2 (59 aa)
MLLYCSGKILGNSSVESRSAVHSLSAGDFTSTTSSTLDAMISLSPLISSSHYLPADECEC

Sequence

>CNT30101567
CAAGGAAACAGTAAACGGAGAGCCGGAGAGACGATAAACGGTTTAACCTGAACACTTTATTATTCACTCATGCACCGATACGTACACTAATTCGTGGGAG
ACAGTGGCTAGCCGGAGAGCTAGCAAATGCAACACCCCGATACTGCGACCGTGTGCGACGACGACTGACGGCGAGGACGCTATAGTGGACTCTAACACAT
AAGCCACGCACCCGCACGGCGGCGCTCGATCTGGCTGTCGTGGAAGGTCTTGGCGGCGGTCTCCTTGATGACGTCCGGGTCGGGCACCTCCTCGCTGGCC
TTGTCGAAGTCCATGGTCCAGCTCACCACCGCGCCGTCGGCGGCGGGGGCGGCGGACGGTGCCGGCGGACTTGCCGTCGCCCTCGACGGTCTCGATGCTC
TTGTACTGCTCGGGGAAGATCTTGGGGAACAGCTCCGTCGAGTCGCGCAGCGCCGTCCACAGCTTGTCCGCCGGCGACTTCACCTCCACCACCAGCTCAA
CCTTGGACGCCATGATCTCTCTCTCTCCCTTAATCTCTAGCTCACACTACCTACCAGCTGATGAATGCGAATGTTA