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Detailed information on CNT30101562

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30676354	Oryza rufipogon	Setaria viridis	29.63	50.79	92.58	256	forward
CNT30517752	Oryza rufipogon	Juglans regia	27.08	54.42	82.48	234	forward
CNT30377662	Oryza rufipogon	Arabidopsis thaliana	40.16	38.38	82.42	347	forward
CNT30278532	Oryza rufipogon	Chenopodium quinoa	38.77	30.48	81.79	335	forward
CNT30728459	Oryza rufipogon	Corchorus capsularis	36	50.16	82.64	311	forward
CNT30629341	Oryza rufipogon	Vigna unguiculata	35.76	28.3	82.85	309	forward
CNT30709122	Oryza rufipogon	Glycine max	15.16	37.22	85.5	131	forward
CNT30164689	Oryza rufipogon	Pistacia vera	38.08	59.82	82.07	329	forward
CNT30190468	Oryza rufipogon	Secale cereale	42.94	38.37	90.57	371	forward
CNT30397803	Oryza rufipogon	Triticum turgidum	38.77	42.68	89.25	335	forward
CNT30561418	Oryza rufipogon	Actinidia chinensis	38.54	33.04	79.88	333	forward
CNT30238817	Oryza rufipogon	Brassica oleracea	38.31	62.1	82.78	331	forward
CNT30144554	Oryza rufipogon	Medicago truncatula	38.77	39.14	82.99	335	forward
CNT30264134	Oryza rufipogon	Brassica rapa	38.31	38.18	82.18	331	forward
CNT30349705	Oryza rufipogon	Eragrostis tef	35.3	43.51	89.84	305	forward
CNT30365925	Oryza rufipogon	Sorghum bicolor	43.98	42.79	92.63	380	forward
CNT30120413	Oryza rufipogon	Citrus clementina	34.95	37.33	82.78	302	forward
CNT30585446	Oryza rufipogon	Echinochloa crusgalli	7.87	22.52	92.65	68	forward
CNT30116414	Oryza rufipogon	Oryza nivara	12.5	38.57	100	108	forward
CNT30333676	Oryza rufipogon	Cynara cardunculus	31.48	52.71	79.78	272	forward
CNT30725707	Oryza rufipogon	Lupinus angustifolius	13.31	20.87	82.61	115	forward

Expression of CNT30101562

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAQNHQQKGSLPSSSLPHQPKFSPHYQASR*

>peptide 2 (50 aa)
MAAIRRQNQRLMLCLMSPFGTSGVGQQLHPSLPLPSRPPCHRCFQLLRTR*

>peptide 3 (36 aa)
MRELIIWDRRWELEVVFNILASLGVLVLKDEMHLVS*

>peptide 4 (40 aa)
MVLDGISDGSKSSAERKFAFFFSSPSTKILTSLSGFKIAV*

Sequence

>CNT30101562
ACAGCAAAAGAATAGGAAATGCAGCAAAGATAATAACTAGCTTGCACTGAACCTCACACTTCTGAAAGAGACTCTTGATGTTTCAACTATCTACGAGAAA
ATAATCACTAGGTGATCAAGAAAGTGATTATATGTCAGGCACAGCACACAAATAAACCCAACATGACTAACTTCTACTGTCCGTGAAGTTCTAACCATTT
AAGCAGGGGTACCAAATCATCATCTGCAGGGAGCATAGGCGACATGAATCTCCTATTATACACTCAAAAAACATAAAAGCCCAAGTTCTCGAAAAAGGAA
AAAAGCAGCCGCCAAAATGGCCGCGATAAGACGTCAAAATCAAAGGCTTATGTTGTGTCTCATGTCTCCCTTCGGGACCTCCGGCGTGGGGCAGCAGCTC
CATCCTTCTCTTCCTCTTCCTTCTCGTCCTCCTTGCCACCGCTGCTTCCAGCTGCTTCGGACTCGGTAGACTTTGGTTTTTTGACCTCGGCTACGGGCTT
CACAGCATCTGGATCAGGGATTTTAGCTCTCTCATCCCAGTCTTCTGGCTTTTTGTCATCAGGATCAGGAATGGTCTTGGATGGGATAAGTGATGGCTCA
AAATCATCAGCAGAAAGGAAGTTTGCCTTCTTCTTCTCTTCCCCATCAACCAAAATTCTCACCTCATTATCAGGCTTCAAGATAGCCGTGTAGACATGAG
AGAGCTTATCATATGGGACAGAAGGTGGGAACTTGAGGTGGTGTTCAACATACTTGCCAGTCTTGGGGTTCTTGTGCTTAAGGATGAAATGCACCTTGTT
AGTTGATCCACATTTGTCAGGACCAAACATAATAGTGTAAGGAGTCTCATTATCAAACTCCTTG