CANTATAdb - search

Detailed information on CNT30101556

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006544, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693191	Oryza rufipogon	Oryza sativa	100	25.24	99.89	937	forward

Expression of CNT30101556

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MEQVPLMLVTKKLCHDKANVFGTSWIAGKAYIYCSKV*

>peptide 2 (32 aa)
MASVVTVSHNLVNTLILLCNNISFETLTKCMQ*

>peptide 3 (31 aa)
MFIGLTSLLHKLSTRLFPDNEMWKTCILLYH*

Sequence

>CNT30101556
ATCCATCACCAAAGAGAGAAAAGATTGAAAGATCTTGGATTAAACAATTTGTGTAATTGTTACTTTGGTGATAGATGATAAACCGATGTTTATAGGATTA
ACCTCTCTTTTGCATAAGTTGTCTACTAGGTTATTTCCCGATAATGAGATGTGGAAGACTTGCATTCTTTTGTACCATTAAGTTTTAAAACCGCCTATTC
ACCCCCCCTCTAGTCGGCCTCCTTGATCCTACACGGGGGTCTCTCAACCAGTTCTCTCCAAAAACCTCGGGAACGCCAGAACTCCTCTCGCTGCTGATAA
CGTTACATTCAGAGCGCATGGGGACTAGAGTTCATGGAACAGGTACCACTGATGTTAGTAACTAAAAAGCTTTGCCATGACAAGGCTAATGTGTTTGGCA
CGTCATGGATTGCGGGTAAAGCGTACATTTACTGCAGTAAAGTATAAATGAATCTATTCGAATAGCCGTGCTCACGGATTTGAGCATTGGGACTCATATG
GTATTTGGTTAGAAACTTAATTCCAAACTTTATTAAATATTGTTGTATTTAAAACATTCTAGGCTTTCTTCCTCTATATTCTTTGCTTTCTGCAAGTAAA
CCTAGCTCTACTCAGATATTACCATTTCATGCATTCATTATTGAATATAATAGCTTGTTGAGTACGTTGTACTCACCCTTGCTTCAACCCCCCTTTTTCA
GAGTCAATTTGATGTTCTTGCTGAAGCTGGGAGTTCAATCATATAAGTTAGTCTCATTCTAACTTAGTTCTCAAGTATAGATTAGATAGATGGTTTAAGT
CTATAGCAAAACAGTAGAGTTGAGTCATTCTATGGCTTCTGTTGTAACAGTTAGCCACAATCTTGTAAATACCCTAATATTATTATGTAATAATATCTCC
TTTGAAACCTTGACTAAATGTATGCAATGAAGAACCA