« Back to Oryza rufipogon search


Detailed information on CNT30101538


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109429Oryza rufipogonOryza longistaminata67.3274.6596.83789forward
CNT30576175Oryza rufipogonOryza barthii98.9884.398.971160forward

Expression of CNT30101538

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MRGQSIAHNKMVRVTKVNCHWLEHGLFLSKISFFCNIYWLTHLSSVGAHK*

>peptide 2 (47 aa)
MLLIVVCATVHVTHFSIWLSLIMDSRCSSLFAHSYLRNILFLHMYCR*

>peptide 3 (31 aa)
MVLNILGVFGSRFLAAVAAGAVQSGCSLQQF*

>peptide 4 (35 aa)
MDFDHGSEHGIFSIEFYRYSFFSLLLTNALLSSSD*

>peptide 5 (32 aa)
LILERNASDCCVCNCACHSFFNLVKSNHGFQV*

Sequence

>CNT30101538
CTGATACTTGAAAGAAATGCTTCTGATTGTTGTGTGTGCAACTGTGCATGTCACTCATTTTTCAATTTGGTTAAGTCTAATCATGGATTCCAGGTGTAGT
TCCCTCTTCGCACATTCATACCTACGCAACATCCTGTTTCTGCATATGTATTGCCGTTAATTGTTGAAACTGCATCATAAACAAATTTTGCACTGAGAAT
ATTTGACTTCTTACATTTGTGGAGAATGCGTGGCCAGAGCATAGCTCATAACAAAATGGTAAGAGTGACTAAAGTCAATTGTCACTGGTTAGAGCATGGA
CTGTTTCTAAGTAAGATTTCTTTCTTCTGTAACATTTACTGGTTAACACATCTGAGTTCTGTGGGTGCTCACAAGTGAGCGTATTGTTTATGTATATTGA
CATATTGTTTCACTTCTAGACGATAAAGAAATCACGAATTTGTAGATAATGTGGGCCATTCCTATGGGCTTCTCCTTTTGCATCTGCATATTACATCTTT
AAGTCTTCAATATGAACAAGAAATGATCTTTCTTGATTGGGAAAAAGTCAGTTATGTCAGGTCACTGGTTATTTCTTGATTGTTGAAATGGACTTTGATC
ATGGATCAGAACATGGTATTTTCTCCATTGAATTCTACAGGTACAGTTTCTTTTCCTTGTTACTGACCAATGCACTTTTGTCATCATCTGATTAGTGTTA
TCATCTGAAAACCAATCTGTATTTCAATGTGTTTTAATCTTCATCTGAAACCCATTGTACCAGCTCTGTTCCTTGACCACAAATCCAACTTGCAGAGAAG
TACACTGACCTAGGATGGCTCCCAAGCAAGGACCAGGAAGTATACATCTAAAAAATAAAGCATTTTTTGTGCCCAAACATTTATGGTCTTGAACATCTTG
GGTGTGTTTGGGAGTCGTTTTTTAGCAGCGGTAGCAGCTGGAGCAGTTCAAAGTGGCTGCAGTTTGCAGCAATTTTGAACTGCCGCAGCCTCAGCAGCTG
TGGCAGGTATGGCTGCCGAACAGAGCCCTTATTGTTCAATTATCACCCTGTGACAGGACTTTCTGAAGGCAAGCTTCTGCATCTAGAATTTCTATTTTGG
TACTTATAGTTCTTGCGTGACATAATTTGTTCTGGCACAATGTACCAACAATTTTGATAGTGAATAACTGAG