Detailed information on CNT30101508


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 5e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692625Oryza rufipogonOryza sativa40.6147.5389.62106forward
CNT30521857Oryza rufipogonSetaria italica46.367.1288.43121forward
CNT30534348Oryza rufipogonEucalyptus grandis24.145.8388.8963forward
CNT30316508Oryza rufipogonCorylus avellana24.143.9287.363forward
CNT30402924Oryza rufipogonBeta vulgaris29.1211.1485.5376forward
CNT30560805Oryza rufipogonActinidia chinensis27.215.1787.3271forward
CNT30590385Oryza rufipogonMusa acuminata38.711.1687.13101forward
CNT3087835Oryza rufipogonVigna radiata54.796.1384.62143forward
CNT30437038Oryza rufipogonAegilops tauschii37.9312.8985.8699forward
CNT30254792Oryza rufipogonAvena sativa65.1338.0395.88170forward
CNT30455848Oryza rufipogonSaccharum spontaneum57.4710.0184.67150forward
CNT30132288Oryza rufipogonLolium perenne65.131791.18170forward
CNT30116505Oryza rufipogonOryza nivara37.1613.2386.697forward
CNT30550541Oryza rufipogonOryza brachyantha66.2813.3894.8173forward

Expression of CNT30101508

Peptides detected in this lncRNA

>peptide 1 (86 aa)
LRFGEPEKERAGATHAVGGAVVRQGGVLGGVERAEPHARAVLGGVPDLRRELAPRPLPHPPVVLPPRHRSRGLLLLPVLRRRRRRRG

>peptide 2 (85 aa)
PFRGAGEGARGSHACGRRRGRTPGRRPRRCRTCRATRARRSWRGPGSPPRTCPTAAASPPCSASPSPPQPRPPPPSRAPPSPPPPR

Sequence

>CNT30101508
CTCCGTTTCGGGGAGCCGGAGAAGGAGCGCGCGGGAGCCACGCATGCGGTAGGCGGCGCGGTCGTACGCCAGGGCGGCGTCCTCGGCGGTGTCGAACGTG
CCGAGCCACACGCGCGCGCCGTTCTTGGCGGGGTCCCGGATCTCCGCCGCGAACTTGCCCCACGGCCGCTGCCTCACCCCCCTGTAGTGCTTCCCCCTCG
CCACCGCAGCCGCGGCCTCCTCCTCCTTCCCGTGCTCCGCCGTCGCCGCCGCCGCCGCGGC