Detailed information on CNT30101505


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN1|NHL2_ARATH, E-value = 1e-22

BLAST vs NONCODE:
NONORUT004848, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673480Oryza rufipogonSetaria viridis29.6161.587.54337forward
CNT30248540Oryza rufipogonAvena sativa29.8857.8284.71340forward
CNT30462560Oryza rufipogonSaccharum spontaneum43.0660.3479.8490forward
CNT30116529Oryza rufipogonOryza nivara66.4369.68100756forward

Expression of CNT30101505

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MYSNIRRANPSSTNRKKQKNPSVHTGSSAG*

>peptide 2 (41 aa)
MPRWTGRRSRGGRSRSAGRRRGRGTRRCRSRGRRACWGCGR*

>peptide 3 (98 aa)
MRSGTNHRNQNQTLQSVRWNAGALGADAGTVMGQLILALGPGTLKAQTLTLSLALSLTSMSNLPAVCCDLKLAAVMSPWSGCWPLKAGESLVDASVDW*

>peptide 4 (98 aa)
MWGRKMRMLQRQLKRPHARHLHGQHRHDTARLAEPIAASYLVAPLPRSATEREREREGGIEQQVEEEETMRVCGLCTCLWWIGWVISTPGRGRNDAFII

Sequence

>CNT30101505
CACAACTCAGAATCAACCAAGGAATCATAATAGATGTCACTCATAGAAGTAATAGGTGATCCTGAATAAAATCTCTGAATGTATCAACCAACATATAGTC
ATATATGATCTGAACAGCAGTAAGTAAGCCGTACCCAAAAGAAAGGGGAAAAAACTAAGAAGAACAAGACATGGATCGATAATATGTGCATGACAAGCGC
TAGCTACAAGGGCTAGAAGATATGTAACCACCTAAACCACAGCGATGTACAGCAACATCCGGCGAGCTAATCCCTCATCAACAAATCGAAAGAAACAAAA
GAATCCATCCGTCCATACTGGAAGCAGTGCTGGCTAATAGTAATCCCCAAATGCGAAGCGGAACCAACCATCGAAATCAGAACCAGACTTTGCAGTCGGT
GCGCTGGAATGCGGGGGCGTTGGGGGCGGACGCTGGGACGGTGATGGGGCAGCTGATCTTGGCCTTGGGTCCGGGAACCTTGAAGGCCCAGACCTTGACC
CTGAGCTTGGCGTTGAGCTTGACCTCGATGTCGAACTTGCCGGCGGTCTGCTGCGACCTGAAGTTGGCGGCGGTGATGTCGCCTTGGAGCGGCTGCTGGC
CCTTGAAGGCGGGGGAGAGCTTGGTGGATGCCTCGGTGGACTGGTAGAAGGAGTCGAGGGGGGCGTAGCCGAAGCGCTGGCCGTCGAAGAGGGCGAGGGA
CTCGACGTTGTCGTAGTAGAGGCCGACGCGCTTGTTGGGGTTGCGGACGGTGAGGTCGACGGTGAGGCTGTAGGCGAGGGCGGAGTTGGTGGAGAGGGTG
AACTGGGTGAGGGCGGCGGAGTCGACGGTGGCGGCGATCATGTGGGGGCGGAAGATGAGGATGCTGCAGAGGCAGCTGAAGAGGCCGCACGCCAGGCACT
TGCACGGGCAGCACAGGCACGACACCGCGCGGCTCGCCGAACCCATCGCCGCCTCCTACCTTGTTGCCCCCTTGCCGAGATCTGCGACGGAGAGAGAGAG
AGAGAGAGAGGGGGGAATTGAACAACAAGTGGAGGAGGAGGAGACGATGCGGGTTTGTGGTTTGTGTACGTGTTTGTGGTGGATCGGGTGGGTTATAAGT
ACTCCAGGTCGGGGTCGCAACGACGCGTTTATAATAAT