Detailed information on CNT30101501


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004101, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553440Oryza rufipogonOryza glaberrima81.8298.8198.71080forward
CNT30576146Oryza rufipogonOryza barthii95.1591.2198.891256forward
CNT30116453Oryza rufipogonOryza nivara32.7310098.61432forward
CNT30604007Oryza rufipogonOryza punctata80.0879.1285.241057forward

Expression of CNT30101501

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MALLSAILLDVQFVQCQWVPLLVVLCTHEPTDKT

>peptide 2 (29 aa)
MMLTLSDCSSTSMVCFTHRETTIFFCISI*

>peptide 3 (45 aa)
MQYFLCYHCFIWIILPSTNINIFFNSIYFPMCYNLQHLLAKHYLS*

>peptide 4 (44 aa)
MHLSKSFILYLQSWISLVKLHLINVGRMVIHGIIIMTSSTLQFN*

>peptide 5 (41 aa)
MVLPFTISNFPVTIFQLSCAHFSPQILYAFFNVFMLTAVMY*

>peptide 6 (36 aa)
MKSYAIFSLLSLFHLDHTTKYQHQYFLQFHLFSNVL*

>peptide 7 (50 aa)
MPASACLLFQFFLPGCESPIPSPIWICMYTRELREIRIACTKFTEITAVS*

>peptide 8 (60 aa)
MNILNEFINNEYIILLIGFDNKEYTVACFATCNSLPFHHMDLKDQQIIYLPACNIYYHRA*

Sequence

>CNT30101501
TAAGGATATTGTTGTGATGCTCTAAGATCAAGATTGACTTGCCTTGTTGTTTTTTAGTCGTAGCAGTGGCAACACCACGCGTCCACCTTCCTCCCTCCGC
CATCGTCGCCGCCTCTCTTCCTGTAGAGCCAGTACCGCAGTAAACCATGCCTGCGTCTGCCTGCCTCCTCTTCCAATTTTTCCTCCCCGGATGCGAATCT
CCTATCCCGTCCCCGATCTGGATCTGTATGTATACACGCGAGCTGCGGGAGATCCGGATCGCATGCACTAAATTCACTGAAATCACCGCAGTGAGTTAAG
TATATACTCCACCTAATAACGAAATGCACTTGAGTAAATCGTTCATTTTGTATCTTCAGTCCTGGATTTCTCTTGTTAAGCTCCATCTTATCAATGTTGG
TAGAATGGTGATCCATGGGATAATTATTATGACAAGCTCTACTTTACAGTTCAACTAGACCATCAATTGGTTTCCTGAATTTTTTTTTATCTGAGCAATG
CCACTGCTTGTTCTGTTCTTTCTCCAACACACTTTTGTGCAAAGTTAATCACCTTAAGAAAAGACCATTAAAAGTGTTAACGATGAAATCCTATGCAATA
TTTTCTTTGTTATCACTGTTTCATTTGGATCATACTACCAAGTACCAACATCAATATTTTCTTCAATTCCATTTATTTTCCAATGTGTTATAACCTACAA
CACCTTCTGGCAAAACACTATCTTTCATAAAGTCTAAGGACGCATGATGCTAACTCTATCAGATTGCTCATCTACTTCTATGGTGTGCTTCACACACAGA
GAGACGACTATTTTTTTTTGTATATCTATATGAATATCTTGAATGAATTCATTAATAATGAATATATCATTCTGTTAATAGGTTTTGATAATAAAGAGTA
TACTGTAGCTTGCTTTGCAACTTGCAATTCATTGCCATTCCACCACATGGACTTAAAAGATCAGCAAATAATATATCTCCCTGCTTGTAACATATATTAT
CATAGGGCATGAACTGAAGTAAATATACACTGTTTCGAGCTGCTAGCCTACTACCAAACAGTACAAGTATATAACAAATAGTCATGGTCTTACCATTCAC
TATTAGTAATTTTCCTGTTACCATATTTCAGCTTTCTTGTGCACATTTTAGCCCCCAAATCTTATATGCTTTTTTTAATGTTTTTATGCTTACTGCTGTG
ATGTATTAACATCCAAAATGGCTCTTCTTAGTGCCATTCTTTTGGATGTGCAGTTTGTACAGTGTCAATGGGTTCCTTTGCTTGTTGTATTGTGTACTCA
TGAACCAACAGACAAAACAC