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Detailed information on CNT30101498


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004354, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30575988Oryza rufipogonOryza barthii69.4235.5799.21504forward

Expression of CNT30101498

Peptides detected in this lncRNA

>peptide 1 (55 aa)
IYATANMTIRKNTTTIQHIGYPELLFTDYILDHCDLFLSLGRHFFPLSGLALARP*

Sequence

>CNT30101498
ATCTATGCCACTGCAAATATGACAATTAGAAAAAATACCACTACTATTCAGCATATCGGCTACCCTGAGTTATTGTTCACTGACTATATCTTAGACCATT
GCGATCTCTTTCTTTCACTTGGTAGGCATTTCTTCCCGTTATCGGGACTTGCACTTGCCCGGCCTTAGTGGTTTTTTAATGATTTTCTTCCCCAGCAAAT
CAAGTAAATAGAAGTAATAATTCAAGTCCCTCCGCAAAGGTAGAAGATCTTGATTCTCTGCAATTCGGCTTCAACCCGATGGAGCTCTCTTCAAAACATA
TCTTTCGGCGTTAGTCTTTCTGTTTGTTTGGAGGTTGTAAAGAAGATAAATTGACTCAGGCTATTTCTTCAGCTTAGAACTATAAACTTTGAGGTACCCA
GTTTTGAACTACCGCAGACTTGTTTCATAGCTTTCAACTAAGCGGCAGACCCGACGCGACTGACGGATAATCCAACGTTAATAGCAGGTCTAATTCCGCG
ATAAAAGAGCTCTGTTTCCAAACAGATTTGTCCATCTGTAATGGAGATCACATTGGTGGGGATATAGGCCGATACGTCTCCAGCTTGTGTTTCAATTCGC
CTCGGGGAATACCACCAGTAGAGTCTGCAGAAGGTGTCGTTCAGGCCATCGGCTGTGGTTCAGAAGTGGGCTCGACCTGCTTTGGGATGGATGAAACTGA
ACACTGATGGAGCACTGAACTTGCAG