Detailed information on CNT30101490


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004305, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370061Oryza rufipogonOryza glumipatula89.1566.6199.41504forward
CNT30575998Oryza rufipogonOryza barthii23.1250.1999.23390forward
CNT30116419Oryza rufipogonOryza nivara91.5896.7499.551545forward

Expression of CNT30101490

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSTWVKGSCSLKDILVVINRICFGMQKLEICALYDVCSSGALCFPLFQYETYSLLEGSF*

>peptide 2 (63 aa)
MCPHDIFIFLVYCSLSIVLCVILTGLYVYFLATLFWLLLLLHVLILGARALELLGLWDDSNGN*

>peptide 3 (40 aa)
MTAMEIDVNVGEGIMFIEGHTSCDQQNMFWDAKVRDMCTV*

>peptide 4 (39 aa)
MEFLGLVWCPLSHKLSEIATVEKFLSLISDVQDILIYNF*

>peptide 5 (54 aa)
LRARSLSFVHSRFLVLSLILSSERERDPSFGSIFSPWIQPMKISTNIIYGANDR*

>peptide 6 (51 aa)
PRALSLFRSLSLSCSLSHSLQREGERSIVWIDFLPLDSTDENFYKYHIWCQ*

>peptide 7 (48 aa)
MYSSMFFYWLHLCGCQLQYMFSIRKLPTKNISLEAFEWLILNLVSFLI*

>peptide 8 (40 aa)
SARALSLSFTLAFLFSLSFSPARGREIHRLDRFSPPGFNR*

>peptide 9 (38 aa)
MVPMTDEIFNKDQIWCIIIVFMRNYSVMFDEIFYEDQI*

>peptide 10 (31 aa)
MCKIFLSIIFRCVHMTFSFFWSIVLCQLFSV*

Sequence

>CNT30101490
CTCCGCGCGCGCTCTCTCTCTTTCGTTCACTCTCGCTTTCTTGTTCTCTCTCTCATTCTCTCCAGCGAGAGGGAGAGAGATCCATCGTTTGGATCGATTT
TCTCCCCCTGGATTCAACCGATGAAAATTTCTACAAATATCATATATGGTGCCAATGACAGATGAAATTTTCAACAAAGATCAGATATGGTGCATAATAA
TAGTTTTCATGAGAAACTACAGTGTTATGTTTGATGAAATTTTCTATGAAGATCAGATATGATGCACAATAATAGATTCTGCTTTGTTTTTGCTTAACAA
GTGCTGCCCGGGACATAACTCTTATGTGTCTACTTATTCCTTTCATTAAAACAGAAAAGGAGAACTAGCCAGGTAAATTCTATGATCGTCAAACTTTTTC
TTGCAGAAAAATTTATGGATGTATAGCTCCATGTTTTTTTATTGGTTGCATTTATGTGGATGTCAGCTTCAATATATGTTTTCTATTAGGAAATTACCCA
CAAAAAATATATCTCTTGAGGCATTTGAATGGCTGATCTTAAACCTTGTATCTTTTTTGATTTAGTTATGGTATTTGATGCCCACTTCTTTCATCTGGGG
ATTTAGTTTAGTTTTCAAATTGTATTTTCAGTTTTGAATCTTTGATTTAACAGATGAAGTCAATATTTTAGGTTTCATGCAGTCCTAAAACACACTTACA
GTGCAACTCACACCACTTACAGTGGAAATATACCTTAGTTACAGTTGTAATTTTTATTATTTCGCACTGTAACTGACTATTGGTAGTTAGATTGTTAATT
ATTGATATTGGTTTTATCAGAGACTTGTAGTTTGGGGAACCCTAGGCATCTTTATTTTCTTAGATATGTGCCTGATATATTTTTTTTTTTGCTAGTTAGT
AATGTAGGCCTAGTTTTGTACTGTTTTTTTTTTCTGTTATCTCTATTTCTCTTGGTAGAATATAGATTGACCTGAGGCTTCTTCCTTGATAGAAGCTTGA
CATACTGTCTCTAGTTTACTTCCATTGCTTAGCATGGAATTTTTAGGTTTAGTGTGGTGCCCGTTATCTCACAAGTTATCTGAGATAGCAACTGTTGAGA
AATTTTTGTCTCTAATTTCAGATGTGCAAGATATTCTTATCTATAATTTTTAGATGTGTCCACATGACATTTTCATTTTTTTGGTCTATTGTTCTCTGTC
AATTGTTCTCTGTGTGATATTGACTGGGTTATATGTGTACTTTTTAGCAACTTTGTTTTGGCTTTTGTTGCTCTTGCATGTGTTGATTCTGGGAGCAAGG
GCCTTGGAGCTGCTTGGATTGTGGGATGACAGCAATGGAAATTGATGTCAACGTGGGTGAAGGGATCATGTTCATTGAAGGACATACTAGTTGTGATCAA
CAGAATATGTTTTGGGATGCAAAAGTTAGAGATATGTGCACTGTATGATGTATGTTCTTCTGGTGCCCTATGTTTCCCCTTATTTCAATATGAAACTTAT
AGCTTATTAGAAGGATCTTTTTGAATCAAAAGTCATGTTTCCCTACTCAGTACTGCTTGATGTAAAGGAATCCAAAATTTCATGCAATTTCCCTAAGAGT
TTTCAAATCTGAGTTGTTTTTGTTTGATTTTGATACTGTATGGCATATCCGGTGAAATCAACAACAAAAAGGTAAAGTGGAACTTAC