Detailed information on CNT30101480


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006227, E-value = 1e-14

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693056Oryza rufipogonOryza sativa44.177.12100482forward
CNT30553328Oryza rufipogonOryza glaberrima52.0639.1199.12569forward

Expression of CNT30101480

Peptides detected in this lncRNA

>peptide 1 (67 aa)
HTSSTPLLFNFFFIFLKVREMEIKYKSHLSYYSTSLIHLECIYMDPLDIHSSAIHPWRITSLILNST*

>peptide 2 (54 aa)
MDRTPASSSSSLPVSSAQPRVRVAVPVDPGHLRLSHCAMIVTKTLGARPPKETS*

>peptide 3 (31 aa)
MPPISPLPAQQSLFGQPFHQQTQLFFLIMFH*

>peptide 4 (43 aa)
MPYHATYLSLASTTITIWSTISPANSTLLPHHVSLRIRPRTLL*

>peptide 5 (38 aa)
MSKLHPKLHHTSSIFWKHLHEATRQPLLLNMDGVQVRT*

Sequence

>CNT30101480
CACACATCATCTACACCTCTCTTATTTAATTTTTTTTTCATTTTTCTAAAGGTGAGAGAGATGGAGATAAAATACAAATCACACCTAAGCTACTACTCTA
CCTCTCTCATTCACCTAGAATGTATCTACATGGACCCACTTGACATTCACTCATCAGCCATACACCCTTGGCGAATCACCTCTTTGATCCTAAATTCTAC
TTAAAAAAAAAAGAAAGAGAGAGAGAGAGAGTTATGTCCAAATTACACCCAAAACTTCACCATACCTCTTCAATCTTCTGGAAACATCTACATGAGGCCA
CTAGGCAGCCTCTCTTGCTAAACATGGATGGAGTACAAGTTAGGACATAGCCTCATTAGTTTCTAACTCATAAAAATCGTGTCCATGCCATATCATGCCA
CCTATCTCTCCCTTGCCAGCACAACAATCACTATTTGGTCAACCATTTCACCAGCAAACTCAACTCTTCTTCCTCATCATGTTTCACTAAGAATTAGACC
AAGAACTTTATTGTAGAGCCAAGAACATCCTCCTCAATCCTTTCAACCGAAGATGTTTAATCCATTGCTTGATTTCTCTGGTGAGCTTCGCTGCATTTCA
ACCATGGCAACGTAATCTACACACCATACCTAATATTTTCATATTCAATATTCTTCATTTTCCATGGATCGAACACCTGCGTCGAGCTCGTCGTCGCTCC
CGGTGTCCAGTGCGCAGCCGCGGGTTCGCGTCGCCGTTCCCGTCGACCCAGGCCATCTCAGACTAAGCCACTGCGCCATGATTGTCACCAAGACCCTAGG
AGCAAGACCACCGAAGGAAACGAGCTGAGGCACCGTCGTTAAAGAGATCGAGCCTTTCTTCTTCAACTCCGGCCGCCGGCGTCAATCTTCAATTCCCGCT
GCTCTGCTCTCCATCTACCGGACCGTGCTGTCACCGTGAAGCCGACATCATCCTCCGCCTTCAAGCCGTTCCGCGAGCTGCTGCTGCCGTCCAAGCCTCG
CCAACACCGTGCTTCTGACCGATGATTGCTTAGACGGTGAAGAAGTGATTTAGGTGCTGACATTTTCCAGTTGCAAGGCAAGTCCCACCTCCC