CANTATAdb - search

Detailed information on CNT30101442

BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30463851	Oryza rufipogon	Saccharum spontaneum	43.85	51.1	88.45	303	forward

Expression of CNT30101442

Peptides detected in this lncRNA

>peptide 1 (33 aa)
NWSEHRIVRPIQRWFHLITLLKSYNYFSILPSM*

>peptide 2 (56 aa)
MHDSTSSRAVDHIRVRYIITRESKENLRFIYSTVTLGSSASAAAASLALLQLSTTA*

>peptide 3 (68 aa)
MRPPHRSRSRIRTPEPSAPSSVTPITESVPPFQIVPVRTYIVYTHLFSGSDDASATVIPSAAAAASSSV

Sequence

>CNT30101442
CCAACTGGAGTGAGCACCGGATCGTCCGACCGATCCAACGCTGGTTTCATCTTATTACCCTCTTAAAATCGTATAATTATTTTAGCATCCTCCCCTCAAT
GTAAAAAAAAGGATCAATCGCTGCAATGCACGACAGCACGAGCAGTCGAGCAGTAGACCACATACGCGTAAGGTACATAATTACACGGGAATCCAAAGAG
AATCTACGATTTATTTACAGCACGGTGACCCTCGGCTCGTCGGCGTCGGCGGCGGCGGCGTCCTTGGCCTTGTTGCAGTTGTCGACGACGGCGTAGAGGC
GGTAGGGCGATGCGTCGGTGGGGACCCGTGACGGTGGCCTCGAGGTAGTTGCAGTACCAGCCGTGGTGCGGGCCGGTGCCGTCGGAGGTGAGGTTCATCC
GGCACGGCGCCTGGCGCATGCAGGGGCCGCGGCCGCTGAAGATGTCGAGGTTGCCGCGTTCGTAGTAGTCGTGGCCGTCGCCCATGAGGCCGCCCCACCG
CTCCAGGTCGCGGATCCGCACCCCGGAGCCGTCGGCGCCCAGCAGCGTCACGCCGATCACCGAGTCCGTCCCGCCCTTCCAGATCGTCCCCGTCCGCACG
TATATCGTGTACACGCACTTGTTCTCCGGGTCCGACGACGCCTCCGCCACCGTGATCCCCTCAGCCGCCGCCGCCGCGTCGTCGTCCGTGG