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Detailed information on CNT30101411


BLAST search results

BLAST vs Swiss-Prot:
sp|P36494|CB4_SPIOL, E-value = 1e-84

BLAST vs NONCODE:
NONORUT004556, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676418Oryza rufipogonSetaria viridis31.367490.54222forward
CNT30523695Oryza rufipogonSetaria italica52.443.7591.11371forward
CNT30517895Oryza rufipogonJuglans regia50.2833.7478.37356forward
CNT30728490Oryza rufipogonCorchorus capsularis18.2220.7485.27129forward
CNT30709868Oryza rufipogonGlycine max17.6622.4480.8125forward
CNT30180937Oryza rufipogonSecale cereale16.123.2290.35114forward
CNT30385668Oryza rufipogonTriticum turgidum18.6425.1493.18132forward
CNT30539684Oryza rufipogonBrassica napus20.4833.9687.59145forward
CNT30236440Oryza rufipogonBrassica oleracea20.4816.0883.45145forward
CNT30553353Oryza rufipogonOryza glaberrima48.8748.2698.84346forward
CNT30436497Oryza rufipogonAegilops tauschii49.1555.5986.78348forward
CNT30242616Oryza rufipogonAvena sativa54.2454.0892.97384forward
CNT30657766Oryza rufipogonTriticum dicoccoides52.455.8787.06371forward
CNT3079565Oryza rufipogonBrassica juncea45.232.6585.94320forward
CNT30464459Oryza rufipogonSaccharum spontaneum52.442.3591.91371forward
CNT30133056Oryza rufipogonLolium perenne39.9749.3991.17283forward
CNT30680613Oryza rufipogonTriticum urartu45.262.8791.56320forward
CNT30346723Oryza rufipogonEragrostis tef30.5139.8590.28216forward
CNT30365897Oryza rufipogonSorghum bicolor26.2734.2591.94186forward
CNT30596187Oryza rufipogonOryza meridionalis49.0179.0499.42347forward
CNT30360809Oryza rufipogonLactuca sativa20.6226.1282.19146forward
CNT30370016Oryza rufipogonOryza glumipatula63.5651.1998.44450forward
CNT30120956Oryza rufipogonCitrus clementina20.216.5781.12143forward
CNT30151656Oryza rufipogonBrachypodium distachyon17.9426.6292.13127forward
CNT30576210Oryza rufipogonOryza barthii61.7293.9899.77437forward
CNT30585419Oryza rufipogonEchinochloa crusgalli38.9828.5189.86276forward
CNT30498137Oryza rufipogonDigitaria exilis49.1536.0291.38348forward
CNT30116579Oryza rufipogonOryza nivara52.459.08100371forward
CNT30558336Oryza rufipogonPanicum hallii44.6354.391.77316forward

Expression of CNT30101411

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MQQLAIKHEARMQAKPNSVCQIHGERERG*

>peptide 2 (71 aa)
MSSSCVPRREPKEKGAMASGCAPASNHGTPLHACPTKIPSTAAIAHRPWISSASLYHLRNAGSLPSPSGSKP

Sequence

>CNT30101411
TGAGATCAATGAAATATCCTTGCTCATTCTGCAGCCTTAATTATATATATTACATATGGTACATACACTGGGAAGAAAAATAAAAAAAATAACTCCTTGA
TTAATTCCCCCATTTGGTTCACGCACACCACCCAACCCAAAAGCGGCCACGAACACAACAAGATACATTTTGCTACTGCTCCTCCGACCTCCAATCGTTC
GATCCGAGCCCATGCACGCGCCCGATCGATGCAACAGCTAGCGATCAAACACGAAGCGCGCATGCAAGCGAAACCCAACTCTGTGTGTCAGATCCATGGC
GAGCGAGAGCGGGGTTGATTGCTCATAGGCCGAGGGCGCCGAGCGGGTCGAAGAACTTGCCGCCGGGGTAGCCCTGCTCGCCGGTGGCGTTGGAGAAGTT
CTCGGCGGTGCGCGACCACGGCGTGGCCCACTCCACCGCCTGCGAGTCCGGGTTGAAGAAGTCGACCCACCGCTTGGACTCTACCCAGCCCATGAGCAGC
AGCTGCGTCCCGAGGAGGGAGCCGAAGGAGAAGGGCGCGATGGCCTCCGGCTGCGCGCCGGCCTCGAACCACGGCACGCCGCTCCACGCCTGCCCGACGA
AGATCCCCAGCACCGCCGCCATCGCCCACCGCCCGTGGATCAGCTCCGCCTCCCTGTACCACTTGAGGAACGCCGGGTCCTTGCCCAGCCCCAGCGGGTC
GAAGCCGA