Detailed information on CNT30101405


BLAST search results

BLAST vs Swiss-Prot:
sp|P84516|PER1_SORBI, E-value = 8e-46

BLAST vs NONCODE:
NONORUT001799, E-value = 1e-120

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693511Oryza rufipogonOryza sativa17.8599.6298.49265forward
CNT30385971Oryza rufipogonTriticum turgidum11.9940.9289.89178forward
CNT30116506Oryza rufipogonOryza nivara62.7666.3398.71932forward

Expression of CNT30101405

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MDVTNCVKKAALSCANRLTMAAVWGSRMSAMSEVNTPCFLVSAM*

>peptide 2 (46 aa)
MRRAPWRGCPPPAAAPAAAASWRWAASPAPSWRHSKTEGAADPGEG*

>peptide 3 (51 aa)
MNSCVPNYLIQGNGTVYTIDSCYKNGGPQEISSLTPNPHIMPKGQNVYFQFS

>peptide 4 (53 aa)
MSVQETVGPHAACTLARMSSTSCSARGCSELALGGIPCSELAPLKDRGSRGSR*

>peptide 5 (95 aa)
MGVTTSRSCFVLGLALQLAAIFREKASSTGLTKAHFDFPTVWPPESATRSAASPMPLLPNRSMRAWTLEVPGPGSWLTRRSGAGARLSSWPRGTG*

Sequence

>CNT30101405
TGGTGATTTCTTAAAATATCGGCAGAGTTGGAGAAGATTTTTTTTTACTTAAAGATAAAAAAAATTAAAACAACATAATTATTACGGTGCGGGAGTACAT
CTTATTAACGCGCGCACGGCCGTAACGAAACATACAAAGGCCATACTGGCGAGACCGACCGACCGGGCCCAAAAGGGGCGGACGTACTAGGTCACACATA
CAACGGCATAATGATGTCGACCCTAGATATTCATCTCGATTATGATCGATGAGCGACATGACATGAATTAAGCAGAGGCAGCGAAGCCCTCCACGACGTC
CACGAGGCGTGCTCCGCTGTTGGTCTTGAAGCAGTTGCGGCGGATCTCGCCTTTGTTCCCGCCGGGCCTCGGCACCTTGCTCAGCTTGACGATGGACGTA
ACGAACTGCGTGAAGAAGGCGGCCTTGTCCTGCGCGAACCGCCTGACGATGGCCGCAGTTTGGGGGTCCAGGATGAGCGCCATGTCGGAGGTGAACACCC
CCTGCTTCCTGGTGAGCGCTATGTAGTAGCCGTTGTCGAAGGTGATGGGGGTGACGACGTCCAGGTCCTGCTTCGTGTTGGGGTTGGCGCTGCAGTTGGC
GGCCATCTTCCGGGAGAAGGCGTCGTCCACGGGCCTCACGAAGGCGCACTTTGACTTCCCCACGGTGTGGCCGCCGGAGAGCGCCACCAGGTCGGCGGCG
TCTCCCATGCCCCTGCTCCCGAACAGGTCGATGAGAGCCTGGACGCTGGAGGTGCCCGGGCCCGGGAGCTGGTTGACGAGGCGCAGCGGGGCCGGGGCGA
GGCTGTCGAGCTGGCCGAGGGGAACGGGGTAGGTGGGCCCGCCGGAGAGGACGACGGCCGCGCGGGTGGCCAGCGCGGAGATGTCGGTGCAGGAGACGGT
GGGCCCGCATGCGGCGTGCACCTTGGCGCGGATGTCCTCCACCAGCTGCAGCGCCCGCGGCTGCAGCGAGTTGGCGTTGGGCGGCATCCCCTGCTCCGAG
TTGGCGCCACTCAAAGACCGAGGGAGCCGCGGATCCAGGTGAAGGCTAAGACCCGCAAGACCTCGAGCAAGAAGTGGGAGATGAAGCCTCGGAGGATCCC
TATGCCTATTATCAGGAAGGAGATGAAGACGATGGCGTCCAGTAGGTCTTAGCACGGTCGTTGCCTGTGGCAATGGCATGCCGCTGCCTGAATTCCGCTG
CCTTATCTATTTCTGCTTTTGGATGTATTCCGGACCTCTCGGTCCGATGAGTTAAGACTATGCCTGCGGGCCTATGATGTAATAATTCGTATTAAGCACT
CGTGTATGTGCACTTGATATTCCAGCTATGAATTCGTGTGTACCAAACTACTTGATCCAGGGAAATGGTACTGTTTACACGATTGATTCCTGTTATAAAA
ACGGGGGTCCACAGGAAATTTCCAGCCTAACCCCCAACCCCCATATCATGCCCAAAGGCCAAAACGTATATTTTCAATTTTCCTG