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Detailed information on CNT30101385


BLAST search results

BLAST vs Swiss-Prot:
sp|P84516|PER1_SORBI, E-value = 3e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673410Oryza rufipogonSetaria viridis6.3241.286.5289forward
CNT30221717Oryza rufipogonHordeum vulgare4.8327.5389.7168forward
CNT30553585Oryza rufipogonOryza glaberrima27.6141.4786.38389forward

Expression of CNT30101385

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MLHAPWRGCRRRAAAPAAAASGLGPCPALSCCLPSDTPMHRTPAHAYAACSVE

>peptide 2 (61 aa)
MSAQETVGPHAACTLARMSSTSCSARGCSVRFGPMPCSELLPPLRYTDASHPCTCICSMFS*

>peptide 3 (44 aa)
MDVTNCVKKAALSCANRLTMAAVWGSRMSAMSEVNTPCFLVSAT*

Sequence

>CNT30101385
CAATATTTAAAAATTAATGTTATACTACTTTGATGATAAAAAAACCTTACAACATATTTACACGATTATTTTGAATAAAGCGAATGATTAAACGAATGCT
TAAAAGTCAATGTCGTTATATATTTTACAAACAGATGAAGAATAATCTATGCATAATGCATGTATAAGTACGAGAGTACTCTATTAGGCTGACATGCATG
TGTATAAGTACGAGAGTACTCTATTTCGTTATGTAAGTTAGTCCTAAGTTAAACTTATGTCAGTACACTTGTATCGTGATAAATTTCAAGTCAAATTTAA
TTAAACTAATTTAGTGGTGGTGCAGATGCTGGTGATTTCTTAAAATATCGGCAGAGTTGGAGAAGATTTTTTTTTACTTAAAGATAAAAAAAATTAAAAC
AACATAATTATTACGGTGCGGGAGTACATCTTATTAACGCGCGCACGGCCGTAACGAAACATACAAAGGCCATACTGGCGAGACCGACCGACCGGGCCCA
AAAGGGGCGGACGTACTAGGTCACACATACAACGGCATAATGATGTCGACCCTAGATATTCATCTCGATTATGATCGATGAGCGACATGACATGAATTAA
GCAGAGGCAGCGAAGCCCTCCACGACGTCCACGAGGCGTGCTCCGCTGTTGGTCTTGAAGCAGTTGCGGCGGATCTCGCCTTTGTTCCCGCCGGGCCTCG
GCACCTTGCTCAGCTTGACGATGGACGTAACGAACTGCGTGAAGAAGGCGGCCTTGTCCTGCGCGAACCGCCTGACGATGGCCGCAGTTTGGGGGTCCAG
GATGAGCGCCATGTCGGAGGTGAACACCCCCTGCTTCCTGGTGAGCGCGACGTAGTAGGCGTTGTCGAAGGCGTCGGGCGTGACGACGTCCAGATTCTGC
AGCCGGTTGGGGTCCTTGGTGCAGTTCACGGCCAGCTTCTTGGAGAAGGTGTCGTCCTGGCGGGCGGCGCGGTCACGGAAGAAGTCGCAGTGCGCCCTCC
CGACGGTGTGGGCGCCGGAAAGCGCCACCAGGTCGGCGGCCTCTCTGAGGCCCTTGCTTCCGAATTTGTCGAGGAGAGCCTGGACGCTGGAGGTGCCCGG
GCCCGGGAGTTGGTTGACGAGGCGCACCGGGGCCGGGGCGAGGCTGTCTTTTTGGCCGAGAGACACTGCGTACGAGGGTCCCCCGGAGACGACGACGGCG
TCACGGGTGGCGAGCGCGGAGATGTCGGCGCAGGAGACGGTGGGGCCGCATGCTGCATGCACCTTGGCGCGGATGTCGTCGACGAGCTGCAGCGCCCGCG
GCTGCAGCGTCAGGTTTGGGCCCATGCCCTGCTCTGAGTTGCTGCCTCCCCTCAGATACACCGATGCATCGCACCCCTGCACATGCATATGCAGCATGTT
CAGTTGAGT