Detailed information on CNT30101372


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XLR1|PIP26_ORYSJ, E-value = 1e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Oryza rufipogonOryza sativa50.459.65100380forward
CNT30289517Oryza rufipogonTriticum aestivum36.2149.3789.38273forward
CNT30387764Oryza rufipogonTriticum turgidum36.2130.7889.38273forward
CNT30553402Oryza rufipogonOryza glaberrima50.472.66100380forward
CNT30436608Oryza rufipogonAegilops tauschii43.2445.3488.96326forward
CNT30657898Oryza rufipogonTriticum dicoccoides36.2137.3588.64273forward
CNT30228928Oryza rufipogonAnanas comosus13.9326.9292.38105forward
CNT30653715Oryza rufipogonRosa chinensis17.923.1685.93135forward
CNT30214941Oryza rufipogonHelianthus annuus10.2130.284.4277forward
CNT30680357Oryza rufipogonTriticum urartu20.1653.5287.5152forward
CNT30596194Oryza rufipogonOryza meridionalis5086.6799.2377forward
CNT30370054Oryza rufipogonOryza glumipatula50.472.6699.21380forward
CNT30109688Oryza rufipogonOryza longistaminata48.9469.62100369forward
CNT30331328Oryza rufipogonDioscorea rotundata36.2153.2281.32273forward
CNT30576241Oryza rufipogonOryza barthii50.457.32100380forward
CNT30116534Oryza rufipogonOryza nivara50.487.96100380forward
CNT30113851Oryza rufipogonFicus carica8.2222.3896.7762forward

Expression of CNT30101372

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MEKKPAQVQEKRRKGVCGLVPSKHFLSLQPGVD*

>peptide 2 (51 aa)
PGRGSRGHCALGRWRRRRCRRGRRSCHRRPRRCRGCRRRRTGRRTTAPCTQ*

>peptide 3 (48 aa)
MPPKAQAMPRVPTPPHWSADDCTLYPMTVATVMYRNRSVAMNSAMSAR*

>peptide 4 (58 aa)
RDVGVAGIALWVGGGEDGVDEDEDHATEGPGDAEGADAAALVGGRLHLVPNDGGDGDV*

Sequence

>CNT30101372
ACCGGGACGTGGGAGTCGCGGGCATTGCGCTTTGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGATCATGCCACCGAAGGCCCAGGCGATGC
CGAGGGTGCCGACGCCGCCGCACTGGTCGGCGGACGACTGCACCTTGTACCCAATGACGGTGGCGACGGTGATGTATAGGAACAGGAGCGTGGCGATGAA
CTCCGCAATGAGCGCCCGGTAGAAGGACCACAGCCGGAGCTCGCCGACGTCGAACAGCGGCGCCGGCGGCGGGTCGGTGTAGTCCTTGGGCCGCACGTGC
TCCGGCTCCTCGCTCACCTCCTTCGACATTGCCGCTCCCTTCAGCAAGCTCAACACGCTACTCACTCTGAGCTAGCTTAGCTCTGCTCTCTCTTCTCTAC
CTCTCTCTTCTCTGATGGATGCGGAGAGGAGGGGAGCGTGGGACTGGCCGGTTTTATTGAGAGCGCGGTGCTGTCATTAATGGAAAAAAAACCGGCCCAG
GTACAAGAGAAGAGAAGGAAAGGTGTGTGTGGGCTTGTGCCATCGAAGCACTTCTTGTCTTTACAACCTGGAGTAGATTAGCTTGCTTGCTGTTGCTGTT
GCCGTTGCTTCTCCATGATTAGAAGCCAAACTTAGCACTTGATAATGATCATGTTAGTGATGAAGTCATGGATAAGTTTGTTGGTTCTATTTAAATGATT
TTAGTGCTGGTATAACACAACATTAAATACTTGACAAAATTCTCTCTATGTGGA